Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq21 113 4e-19 seq3426 105 5e-17 seq5 105 5e-17 seq3001 102 7e-16 seq461 102 7e-16 seq630 91.5 1e-12 seq233 89.7 4e-12 seq3275 87.8 1e-11 >seq21 Length=3941259 Score = 113 bits (124), Expect = 4e-19 Identities = 153/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 563267 CAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAA 563326 |||| ||||| ||| ||||| ||||| || ||||| || || ||| ||| |||| Sbjct 1372422 CAAG-TGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCAA 1372364 Query 563327 GTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAA 563386 | ||||| || |||||||| || |||||||| ||||| ||||| || || || ||||||| Sbjct 1372363 GCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAA 1372304 Query 563387 TTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTT 563444 |||| || || ||||||||||| || | | || || || |||| || || Sbjct 1372303 TTTTAGCCTTCACGTTGTCAATTGTATC--TGAGCTTTCAACCTCCAGGGTAATGGTCTT 1372246 Query 563445 ACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | || || |||||||||||||| Sbjct 1372245 GCCAGTCAAGGTCTTGACGAAAATTTGCAT 1372216 Score = 102 bits (112), Expect = 7e-16 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 |||||||| || || || || | ||| ||||| ||||| || ||||||||||| || Sbjct 1372624 ATATTGTAGTCGGCAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTC 1372565 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| ||||| || ||||| || |||||||||||||| || || ||||||||| Sbjct 1372564 TGCTGGTCAGGCGGGATTCCCTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTA 1372505 Query 563413 TCAGTG-TGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 || | | | || | | || |||| || || ||||| | ||||| || |||||||| Sbjct 1372504 TCCGAGCTCTCAACCTCCAAG-GTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTG 1372446 Query 563472 CAT 563474 ||| Sbjct 1372445 CAT 1372443 Score = 96.9 bits (106), Expect = 3e-14 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 563286 TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAAT 563345 ||||| |||||||||||||| |||||||| ||| |||||||| || || ||||| || Sbjct 1371946 TTTGG--ATATTGTAATCAGCAAGAGTTCTGCCATCCTCAAGTTGCTTACCAGCAAAGAT 1371889 Query 563346 AAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 563390 || || ||||||||||| || ||||| || ||||| ||||| || Sbjct 1371888 GAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCCTGAATCTT 1371844 Score = 95.1 bits (104), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 563262 GAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATC 563321 ||| || | ||| || ||| ||||| || ||||| || || ||||| | ||| Sbjct 1372200 GAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATC 1372141 Query 563322 TTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 563381 || ||||| || || |||||||| ||||||||||| ||||||||||| || || || || Sbjct 1372140 CTCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTC 1372081 Query 563382 TTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGTAACAG 563440 |||||| || || || ||||| || |||| | | || |||||||||| | Sbjct 1372080 TTGAATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGAC-CTCGAGAGTAATGG 1372022 Query 563441 TTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || ||||| || || || || || || ||||| Sbjct 1372021 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 >seq3426 Length=3004207 Score = 105 bits (116), Expect = 5e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||| | || || |||||||| ||| ||| || ||||||||||||||||| ||| Sbjct 2139214 CTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCTAGTGTT 2139155 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||| ||||| || || || || || | ||||||||| || || || || Sbjct 2139154 CGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCCC 2139095 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 ||||| || || || || || || |||| |||||||| | | || || || Sbjct 2139094 TCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGAC-CTCAAG 2139036 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || ||||| || || ||||| ||||| || ||||| Sbjct 2139035 GGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2138994 >seq5 Length=3793322 Score = 105 bits (116), Expect = 5e-17 Identities = 113/149 (76%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | || || ||||||||||| |||||||| ||| | || || ||||| || Sbjct 1539516 GCAGTGGTTACAGTGCCAGCATATTTCAATGACTCTCAAAGGACGGCCACAAAAGACGCC 1539457 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || || ||||| | | ||||||||||| |||||||| |||||||| ||| |||| Sbjct 1539456 GGCCGCATAGCTGGTTTAGAGGTTCTTCGTATCATCAATGAGCCTACTGCGGCTTCACTG 1539397 Query 550520 GCATATGGACTTG---ATAAACATAATGA 550545 || |||||| ||| | ||| ||||||| Sbjct 1539396 GCGTATGGATTTGAAAAGAAAAATAATGA 1539368 >seq3001 Length=2574463 Score = 102 bits (112), Expect = 7e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 |||||||||||||| ||| || |||||||||||||| ||||||| ||| || Sbjct 511750 ACAAGATGAAGGGTGGATTCCTTCTGTATATTGTAATCAGCAAGAGTTCGCCCATCATCT 511691 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 563381 ||||| || || ||||| || |||||||| || |||||||||||||| || ||||| Sbjct 511690 AGTTGCTTGCCAGCAAATATCAGTCTTTGTTGGTCAGGAGGAATTCCCTCCTTATC 511635 >seq461 Length=5900637 Score = 102 bits (112), Expect = 7e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || || || || ||||||||||| ||| | ||| |||||||||||||| || || | Sbjct 2470309 AGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGG--ATATTGTAATCAGCAAGGGTCC 2470252 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | ||||||||| || || || ||||| || || || ||||| || || || || || | Sbjct 2470251 TCCCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCT 2470192 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGA 563433 | || || |||||||| || || ||||| ||||| | | | || || || Sbjct 2470191 CCTTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCAC-CTCAAGG 2470133 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || ||||||||||| ||||| ||||| ||||| Sbjct 2470132 GTAATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCAT 2470092 Score = 96.9 bits (106), Expect = 3e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 |||||||||||||| ||||| ||| ||| || | ||| || |||||||| || || ||| Sbjct 2470045 ATATTGTAATCAGCCAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGCCTT 2469986 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 ||||| |||||||| || ||||| || || ||||| ||| || || || || || Sbjct 2469985 TGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTG 2469926 Query 563413 TCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 || | | | || | || | || |||||||| || || || || ||||||||| Sbjct 2469925 TCCGAGCTCTCAACCTCCAATGTGATCGTCTTACCAGTCAGGGTCTTGACAAAAATTTGC 2469866 Query 563473 ATA 563475 ||| Sbjct 2469865 ATA 2469863 >seq630 Length=6709877 Score = 91.5 bits (100), Expect = 1e-12 Identities = 188/280 (67%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 552295 TACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTA 552354 |||| | |||||||| || || ||||| ||| | ||||| | || |||||| | ||| Sbjct 1566282 TACTACTCGATGTTACACCGCTCTCTCTAGGTATTGAAACTCTAGGTGGTATTTTCACTC 1566223 Query 552355 ATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATT 552414 | | ||| || |||| || || ||||| || || | || |||||||| | Sbjct 1566222 GTTTAATCAATCGAAACACCACAATTCCAACCAAGAAGAGCCAAGTCTTTTCTACAGCTG 1566163 Query 552415 CAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474 | ||||| ||||| ||| ||| | |||| ||||||| ||| | | | | Sbjct 1566162 CTGATAACCAAACCCAGGTTGGGATTAAGGTTTTGCAAGGAGAGAGAGAGATGGCAGCTG 1566103 Query 552475 ATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTAC 552534 |||||| | | ||| ||| | | ||||||| || ||||| || | ||| | | Sbjct 1566102 GTAATAAGCTCTTGGGTGAGTTTGAGCTTCAAGGTATACCCCCTGCCCCAAGAGGAATGC 1566043 Query 552535 CGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAAT 552574 | |||||||| || ||||| ||||||||||| ||||| || Sbjct 1566042 CTCAAATTGAGGTAACTTTTGATATCGATGCTAATGGTAT 1566003 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| ||||| || || || ||||| ||||| | || || || || || ||||||||| Sbjct 1567641 GCAGTCATAACAGTGCCCGCTTATTTCAATGATGCTCAGCGCCAGGCCACAAAAGATGCT 1567582 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | ||||| || | |||| | | || |||||||| || ||||| ||||| ||| Sbjct 1567581 GGTAGGATTGCAGGGTTGGATGTGCAAAGGATCATCAATGAGCCCACTGCAGCTGCTCTT 1567522 Query 550520 GCATATGGACTTGATAA 550536 | ||||| ||| |||| Sbjct 1567521 TCTTATGGTCTTAATAA 1567505 >seq233 Length=5158861 Score = 89.7 bits (98), Expect = 4e-12 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 550311 AACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCA 550370 |||||| ||| ||| |||||| | | ||||| | |||||||| ||||||| Sbjct 4860144 AACAATATTCTCCAAGCCAAATTGGGGCCTTTGTTTTGACAAAAATGAAGGAAACAGCTG 4860203 Query 550371 GTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATG 550430 | | |||| || || || | || || || || || ||||| |||||||||| Sbjct 4860204 AATCGTACCTTGGGAAATCTGTGACCAAAGCTGTGATCACAGTCCCAGCCTATTTTAATG 4860263 Query 550431 ACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTA 550490 | | || | || || || || ||||| ||| | |||||||| ||| |||||| | | Sbjct 4860264 ATGCGCAGAGGCAGGCAACAAAGGATGCAGGAAGAATTGCTGGTCTTGATGTTCAGAGGA 4860323 Query 550491 TTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||||||||| || || |||||||| || | ||||| Sbjct 4860324 TTATCAATGAGCCCACAGCTGCTGCTCTGTCCTATGG 4860360 >seq3275 Length=3666727 Score = 87.8 bits (96), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||||| |||||| | ||| || ||||||||||||| ||||||| ||| | Sbjct 2666526 ACAAGATAAAGGGTGCATTCCTTCTGTATATTGTAATCAGTAAGAGTTCACCCATCCTGT 2666585 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 563381 ||||| || || ||||| || ||||| || || |||||||||||||| || ||||| Sbjct 2666586 AGTTGCTTGCCAGCAAATATCAGTCTCTGTTGGTCAGGAGGAATTCCCTCATTATC 2666641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028992125605540