Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq922 215 6e-51 seq557 107 2e-18 >seq922 Length=8123900 Score = 215 bits (238), Expect = 6e-51 Identities = 608/920 (66%), Gaps = 29/920 (3%) Strand=Plus/Minus Query 36861 TTATTACTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATT 36919 ||| |||| ||||| ||| ||||| ||||||||||| | |||| || || ||||| Sbjct 2994354 TTAATACTGTTCATCACTGAAGCCTTTTGGTATTCTCCAACCC-TCTTCTCAAAGAAATT 2994296 Query 36920 TGTCTTTCCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATT--ATAT 36977 ||||| || | ||||| || |||||| |||||||||| || || | ||| Sbjct 2994295 AGTCTTCCCCTGCAGTGAAATGAGTTCCATCCAATCAAATGGGTTT--TGAACCCCATAG 2994238 Query 36978 ATAGTACTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACAC 37037 || || ||| || | |||| |||||||| || |||||||| ||||| | | | Sbjct 2994237 ATTTTATCACACCCCAAAGCATTCAACAGCCTATCAGCCACAAATTCGATGTACTGGCTC 2994178 Query 37038 ATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTT 37097 || || | ||| || || | ||| || | ||||| || |||| | | Sbjct 2994177 ATCAGATTGCCGTTCATTCCCACTAGAGCACAGGGCAAGGCATCACAAACAAATTCTCTC 2994118 Query 37098 TCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATAT--T 37155 ||||| ||||| || | |||||||| || || || || || | | | | Sbjct 2994117 TCTATCTCTACAGATTCCCTTACTATATTTTGAACGCTTTGTTGAG--GGAGCTTGTGGT 2994060 Query 37156 TTAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCA 37215 ||| | | | | | | || ||||||||||| ||||||||||||||||| || | Sbjct 2994059 TTAGAAGATCATAGAGAAGGCAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGA 2994000 Query 37216 ATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTG 37275 ||||||||| |||||||| || ||||||||||| |||||||| | ||||||||| | Sbjct 2993999 GTTCATTAGAGAAGGTTAAACCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAAC 2993940 Query 37276 CAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGT-ACCG 37334 |||| ||||||||||| ||||||||||| ||||| || | | || | | | Sbjct 2993939 AAAAACTACCAGAAAAGAAGATACCTTCAACACAGGCAAAAGCAATCA-ACCTCTCTGCA 2993881 Query 37335 AAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACAT 37394 |||| | | ||| ||||||||| | ||| ||||| ||| |||||| Sbjct 2993880 AAAGATTCAGAGGAAT---TGATCCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAG 2993824 Query 37395 TCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACT---ATCTGTTATATAA 37451 || ||||||| || | || | | | | || ||||| ||| | || ||| Sbjct 2993823 GGAACCGTTTCAACAGCCCTGAACA-ATCGACTCTT--CTCACTGGAATCCTTGATGTAA 2993767 Query 37452 GTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCA 37511 | |||| | | || ||||| |||||||| || |||||||| || ||||| || ||| Sbjct 2993766 GATTCAAGCAAGAGGCTGTACATCTCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCA 2993707 Query 37512 TAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCA 37571 || ||| |||||| || | | |||||| || || | || | || | ||||||| Sbjct 2993706 TAGAAAGCCCTAGCCTCTGCAACTTGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCA 2993647 Query 37572 TTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA 37631 ||||| |||||| |||||||||||||||||| |||| |||| || ||| |||| Sbjct 2993646 AGGACTATACCATCAGAAGCTGCAAAGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCC 2993587 Query 37632 TCA----TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAAC 37687 || | || || | ||| | | || |||| || | ||| || || ||| | Sbjct 2993586 CCAGAAGTGAGAGAA----TCCCAGTGCTGAAGGTCTTGAGAGAGATCGACCTCTTCAGC 2993531 Query 37688 GGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGG 37747 ||||| ||| ||| ||| ||||||||| |||||| | || || ||| || Sbjct 2993530 AGTCCAGAAAGAGGCCTCTGCTTTCTTATACATCTCCCAAATTTGGGGATATTTTATGGG 2993471 Query 37748 AAATATTACAAATCTATCAG 37767 ||| || ||||| ||||| Sbjct 2993470 AAACATGCAAAATCGATCAG 2993451 >seq557 Length=6368207 Score = 107 bits (118), Expect = 2e-18 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 || |||| ||||| |||||||||||||||| ||| |||||||| || | |||||| | Sbjct 1405737 TATACAACAAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCG 1405796 Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGC 37273 | ||||||||||| ||||| ||||||| ||||||| |||||| || || Sbjct 1405797 AGAAGGTTAATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAATGGC 1405845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592274256845840