Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq461 105 5e-18 seq21 102 6e-17 >seq461 Length=5900637 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | || | |||||||| || ||| ||| || || ||||||||||||| Sbjct 2470091 GCCACCCCTCAACCTGAGGACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGC 2470032 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | | | || ||||| ||||| |||||||| ||||| | || || || | || Sbjct 2470031 CAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGG 2469972 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| |||||||| ||||||| || ||| | | | | || || ||| || Sbjct 2469971 GATGCCTTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCCGAGCTCTCAAC 2469912 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || || |||| || || |||||||| ||||| Sbjct 2469911 CTCCAATGTGATCGTCTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | ||||| ||| || ||| ||| || |||||||| || || | || | || Sbjct 2469625 AGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCGAGGGTACGG 2469566 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| |||||||||||||| |||| | || || || | ||| | |||||| Sbjct 2469565 CCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCCTCC 2469506 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || ||||| ||| ||||||| || Sbjct 2469505 TTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTCAACCTCCAAAGTG 2469446 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || |||||||| ||||| Sbjct 2469445 ATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGCAT 2469408 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | |||| | |||||| || || || ||| |||||||| |||||||| | Sbjct 2469407 GCCGCCTCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGC 2469348 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | ||| | || ||||||||||| || ||||| || || | || ||||| | || Sbjct 2469347 AAGAGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGG 2469288 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | || |||||||| ||||| |||||| | | || ||||| ||| || Sbjct 2469287 GATCCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGAC 2469228 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || || | ||||| || || || ||||| Sbjct 2469227 CTCAAGGGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| || ||| ||| || || ||||||||||||| || | | Sbjct 2470309 AGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTC 2470250 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || | ||| || || | || | ||||||| Sbjct 2470249 CCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCC 2470190 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || ||| | | | || || ||||||||| | ||| Sbjct 2470189 TTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCACCTCAAGGGTA 2470130 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | ||| || |||||||||||||| Sbjct 2470129 ATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCAT 2470092 >seq21 Length=3941259 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | |||||| ||||| ||| ||| ||||| ||||||||||||| ||| ||| Sbjct 1371977 AGCCTGAGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTG 1371918 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||||| ||||| || || | ||| ||||| | ||| | |||||| Sbjct 1371917 CCATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCC 1371858 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || |||||| || ||| | | | || || || ||| ||||| | ||| Sbjct 1371857 TTATCCTGAATCTTGGCCTTCACATTATCGATAGTGTCCGAGCTCTCGACCTCAAGAGTA 1371798 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | || || ||||| ||||||||| Sbjct 1371797 ATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATC 1371759 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| |||||||||||| || ||| ||| || || |||||||| || | || | || Sbjct 1372660 AGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGG 1372601 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || || ||||| || || | ||| || || | || | |||||| Sbjct 1372600 CCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCC 1372541 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || || || | | | | || || ||| ||||||| ||| Sbjct 1372540 TTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAGGTA 1372481 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| ||||| |||||||| ||||| Sbjct 1372480 ATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380910923177958