Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq922 138 2e-27 >seq922 Length=8123900 Score = 138 bits (152), Expect = 2e-27 Identities = 386/590 (65%), Gaps = 23/590 (4%) Strand=Plus/Minus Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179 ||||||| | ||| ||||| || | ||| || ||||| || | ||||| | || | Sbjct 2994050 CATAGAGAAGGCAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAG 2993991 Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGC 48239 ||||| | ||||||||| | ||||| | ||| ||||| || || | ||| | Sbjct 2993990 AGAAGGTTAAACCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTAC 2993931 Query 48240 CAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA---AG 48296 |||| |||||||| || || || || || || | | ||||||| | ||||| || Sbjct 2993930 CAGAAAAGAAGATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAG 2993871 Query 48297 CGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCG 48356 | ||| ||||| |||||||||||||| || || | || || | || Sbjct 2993870 AGGAATTG------ATCCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCG 2993817 Query 48357 TCTCTATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGA 48413 | || | |||| ||| | | |||| ||||| | ||| | || | | Sbjct 2993816 TTTCAACAGCCCTGAACAATCGACTCTT---CTCACTGGAATCCTTGATGTAAGATTCAA 2993760 Query 48414 GCA----GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAG 48469 ||| ||| ||||||||||||||| | || || || ||||||||||| || ||| Sbjct 2993759 GCAAGAGGCT----GTACATCTCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAG 2993704 Query 48470 AAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTG 48529 || ||||| ||||| || || || || | ||||| || || || ||| | Sbjct 2993703 AAAGCCCTAGCCTCTGCAACTTGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGG 2993644 Query 48530 ACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTG 48589 ||||| ||||| ||||| |||||||| ||||||||||| | | ||| || || Sbjct 2993643 ACTATACCATCAGAAGCTGCAAAGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCA 2993584 Query 48590 TGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAG 48649 ||||||| || |||| ||| | ||||| || || || ||||| |||||||| Sbjct 2993583 GAAGTGAGAGAATCCCAGTGCTGAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAG 2993524 Query 48650 AAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATAGTCTAT 48699 || || || |||||| || ||||| |||| || | ||||| | ||| Sbjct 2993523 AAAGAGGCCTCTGCTTTCTTATACATCTCCCAAATTTGGGGATATTTTAT 2993474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931465892656640