Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2758 111 2e-19 seq1199 84.2 3e-11 >seq2758 Length=2366178 Score = 111 bits (122), Expect = 2e-19 Identities = 196/284 (69%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||| ||||||||||| ||||||||||| ||||| || || ||||| | | || Sbjct 1358264 TTTGTTGAGATGTTTGTGGGTGTGGGTGCTTCTAGGGTCCGTGACCTCTTCAAGAAAGCA 1358323 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 |||||| || || || || || |||||||||||||||| || || | |||| | Sbjct 1358324 AAGGAAAATGCTCCTTGCATCGTGTTTGTTGATGAGATTGATGCAGTTGGTAGGCAAAGG 1358383 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | || || | | | | | ||||| ||||| || |||||| | ||||| || | | Sbjct 1358384 GGGGCGGGAATTGGAGG--TGGGAATGATGAGAGGGAGCAAACACTCAATCAGCTCTTGA 1358441 Query 175574 CCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCG 175633 | || |||||||| || || | || || || | || || || || ||||| || | Sbjct 1358442 CTGAAATGGATGGTTTCGAAGGCAACACGGGTATCATTGTGATAGCTGCAACTAACCGTG 1358501 Query 175634 TGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 ||||| ||||| ||||| ||||| || || || |||||| Sbjct 1358502 CTGATATTCTTGACTCTGCCCTGCTTCGTCCAGGGCGGTTTGAT 1358545 >seq1199 Length=7341449 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTC-AAC 75185 ||||||| ||| | || ||| ||||| ||||||| || ||| || || |||||| || Sbjct 5064880 CGGGACTTTGACTATGATTATTTTGGGTTCAAAACTCTCGAGC-GATCTTATCTTCTAAA 5064822 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 | || | || | | | || | || || | ||||| ||| | || || | |||| Sbjct 5064821 AGTTCAA-GGAAAGGTTGTTGAGAGGCCTCAACATATGTTGATGAGAGTAGCTGTTGGCA 5064763 Query 75246 TCCACGGGGAAGACATTGATTCTG-TCTTGGAGACATACGACAAGATGTCCCAAGGTATG 75304 | ||| ||||||||||||||||| ||| | |||||| | |||||| ||| || | Sbjct 5064762 TTCACAAGGAAGACATTGATTCTGCTCTAAG-GACATATCATTTGATGTCTCAACGTTGG 5064704 Query 75305 TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACC 75345 |||| ||| || | |||||| | |||||| |||| ||||| Sbjct 5064703 TTCACTCATGCTTCTCCAACCTTGTTCAATTCTGGGACACC 5064663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596526751388480