Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq461 127 4e-24 >seq461 Length=5900637 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193148 AAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATC 193207 ||| |||||||| | ||| | ||| || |||||||||||||| | || | ||| Sbjct 2469620 AAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCGAGGGTACGGCCATC 2469561 Query 193208 GTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 193267 || ||||| || ||||||||||| || || || || ||||| || ||||| || || || Sbjct 2469560 TTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCCTCCTTGTC 2469501 Query 193268 TTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGT 193327 || || |||| || | ||| |||||| || ||| |||||| || | ||| || || Sbjct 2469500 CTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTCAACCTCCAAAGTGATGGT 2469441 Query 193328 TTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || || || || ||||| |||||||| Sbjct 2469440 TTTACCAGTGAGGGTCTTCACAAAAATTTGCAT 2469408 Score = 111 bits (122), Expect = 3e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| ||||| ||||||||||||||||| || ||||| || || ||||| || Sbjct 2469107 ATCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTT 2469048 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || ||||| || | |||| ||| || || || || |||||| || || || || Sbjct 2469047 GTCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACCTCCAGGGTGAT 2468988 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || ||||| ||||| ||||| || ||||| Sbjct 2468987 GGTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899589782322720