Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq922 230 3e-55 seq1199 104 3e-17 seq21 86.0 9e-12 >seq922 Length=8123900 Score = 230 bits (254), Expect = 3e-55 Identities = 558/844 (66%), Gaps = 8/844 (1%) Strand=Plus/Minus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| |||| ||||||||| || | ||||| |||||||| ||||| || | || ||| || Sbjct 2994334 AGCCTTTTGGTATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAGTGAAAT 2994275 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979 | | ||| |||||||||| || ||| ||| || || | | Sbjct 2994274 GAGTTCCATCCAATCAAATGGGTTTTGAACCCCATAGATTTTATCACACCCCAAAGCATT 2994215 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 || | ||||| || |||||||||| || || ||||| || || ||||| || | Sbjct 2994214 CAACAGCCTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCGTTCATTCCCAC 2994155 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 ||| | || | |||||| || ||||||| |||||||||| ||||| || ||| Sbjct 2994154 TAGAGCACAGGGCAAGGCATCACAAACAAATTCTCTCTCTATCTCTACAGATTCCCTTAC 2994095 Query 18100 TATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159 ||| ||| || || || || | || | ||| || || ||| | | || Sbjct 2994094 TATATTTTGAACGCTTTGTTGAGGGAGCTTGTGGTTTA---GAAGATCATAGAGAAGGCA 2994038 Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 ||||||||| |||||||||||||||||| || || | ||| ||| || ||||| || Sbjct 2994037 AGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAACC 2993978 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 ||||||| ||| |||||||||||||||||||| || ||||||| ||||||||| || Sbjct 2993977 AGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAGAT 2993918 Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTAT 18339 ||| ||||| || || || || || || || || |||||| ||| | | || Sbjct 2993917 ACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAA---GATTCAGAGGAATTGAT 2993861 Query 18340 CCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAA 18399 ||||||| | ||||| ||| ||| | ||| || | | || | ||| | || Sbjct 2993860 CCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAA 2993801 Query 18400 CAAATCATCT-TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | |||| || || || ||||||| || || |||| || | || | ||||| | Sbjct 2993800 C-AATCGACTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATCT 2993742 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 |||| || ||| |||| || || ||||| || | ||| || | |||||||| | | || Sbjct 2993741 CAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACTT 2993682 Query 18519 GAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 ||| ||| | |||| | | | || ||| |||||||| |||| || ||| | Sbjct 2993681 GAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCAA 2993622 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCAT 18638 | || || | |||| | ||||| |||||||| | ||||| | ||| | | Sbjct 2993621 AGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGCT 2993562 Query 18639 CTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGT 18698 | |||| || ||||| || ||||| | ||||| ||||| | || || | || | Sbjct 2993561 GAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTAT 2993502 Query 18699 ACAT 18702 |||| Sbjct 2993501 ACAT 2993498 >seq1199 Length=7341449 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || || | ||||| | ||||| || || ||||| | || ||||| Sbjct 1127870 AAGATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGC 1127811 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || || || || ||||| || || ||||| |||||||| ||||| Sbjct 1127810 TCCGATACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGAT 1127751 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | | || | || |||||||||||||||||| | |||| || | ||||| Sbjct 1127750 CAACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTAC 1127691 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||| |||||| |||| |||||| | || | ||| | ||||| || Sbjct 1127690 AATATCCAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGAGGAGG 1127641 >seq21 Length=3941259 Score = 86.0 bits (94), Expect = 9e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| || |||| || || || ||||| | ||||| ||| || Sbjct 1372670 AATGCAGATTTTTGTTAAGACCCTGACCGGCAAGACCATTACTCTTGAAGTGGAAAGCTC 1372729 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| | || || ||||| || || || || || || || || Sbjct 1372730 GGATACCATTGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGGATTCCACCTGATCA 1372789 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| |||||||||||||| ||| Sbjct 1372790 GCAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGAT 1372826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731819433293600