Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq922 125 1e-23 seq461 118 2e-21 seq21 111 3e-19 seq1199 109 1e-18 seq3426 91.5 3e-13 seq557 91.5 3e-13 seq2419 87.8 4e-12 >seq922 Length=8123900 Score = 125 bits (138), Expect = 1e-23 Identities = 261/383 (68%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 49653 CTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTA 49712 ||||| || |||||||| | || || ||| | | | ||||| |||| || | Sbjct 2994207 CTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCGTTCATTCCCACTAGAGCA 2994148 Query 49713 AATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcata 49772 | || || |||||| || ||||||| | ||||| ||||||| || | | ||| | Sbjct 2994147 CAGGGCAAGGCATCACAAACAAATTCTCTCTCTATCTCTACAGATTCCCTTACTATATT- 2994089 Query 49773 attatattattttttgat--aatttatatttaatatgattcgcatatattaaACATGCAA 49830 || | ||| |||| | || | || | | ||| |||| | | || |||| Sbjct 2994088 -TTGAACGCTTTGTTGAGGGAGCTTGTGGTTTAGAAGAT---CATAGAGAAGGCAAGCAA 2994033 Query 49831 AATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCA 49890 ||||| |||||||| || || || || || | ||||||| || ||||| || |||| Sbjct 2994032 AATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAACCAGGCA 2993973 Query 49891 TTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCT 49950 |||| || || ||||| ||||||||||| || |||||||| ||||||||| ||||| | Sbjct 2993972 TTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAGATACCTT 2993913 Query 49951 CGACACACGCAAATGCTATTATTCTTGCT-CCAAACATTAATTTATCATCTAATATCCAA 50009 | ||||| ||||| || || | || || | ||| ||| | | | | ||||| Sbjct 2993912 CAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCA--GAGGAATT--GATCCAT 2993857 Query 50010 TTTATAGCCCAATCTGCTTTTTT 50032 |||| ||||| ||||||||||| Sbjct 2993856 TTTAGCGCCCAGTCTGCTTTTTT 2993834 >seq461 Length=5900637 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| ||||| |||| | || || |||| |||||||| || |||||||| |||||||| Sbjct 2469134 GATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAATCT 2469075 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || ||||| || || ||||| || || ||||| || |||||||| ||| | Sbjct 2469074 CTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTTGCCTTTACATTGTCTATGGT 2469015 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || || || |||||||| ||||||| ||||||| ||| ||||| Sbjct 2469014 GTCAGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTG 2468955 Query 192534 CAT 192536 ||| Sbjct 2468954 CAT 2468952 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 |||||||| || | | || || |||| |||||||| ||||| ||||| || || || Sbjct 2469589 ATATTATAGTCGGCGAGGGTACGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCTT 2469530 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || ||||| || ||||| || || || || || || || |||||| |||| Sbjct 2469529 TGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTG 2469470 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| || || || | ||| |||||||||||||| | || || | ||| || ||| Sbjct 2469469 TCTGAACTCTCAACCTCCAAAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGC 2469410 Query 192535 AT 192536 || Sbjct 2469409 AT 2469408 Score = 84.2 bits (92), Expect = 4e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||| | ||| || | || | ||| | || | ||| || |||||| ||||||| Sbjct 2470320 TACCACCACGAAGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAG 2470261 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || | |||| || | || || ||||||||||| | ||||| || || |||| Sbjct 2470260 CAAGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTG 2470201 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || || || || || || ||||| || ||||| || | ||| || || | Sbjct 2470200 GGATGCCCTCCTTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCA 2470141 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || || |||||||| || ||||| | || |||| ||| |||||||| Sbjct 2470140 CCTCAAGGGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCAT 2470092 >seq21 Length=3941259 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | ||| || | || ||||| | || | ||| || |||||| || || | Sbjct 1372898 ACCCCCACGAAGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGC 1372839 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | || |||||||||||||| || ||||| ||||||||||| Sbjct 1372838 CAGGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGG 1372779 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| || || | || ||||| || | ||| || ||| || Sbjct 1372778 AATCCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCAC 1372719 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||| ||||||||||| || || || | || |||| ||| ||||||||| Sbjct 1372718 TTCAAGAGTAATGGTCTTGCCGGTCAGGGTCTTAACAAAAATCTGCATT 1372670 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || |||| || | ||| || |||||| ||||||| | |||| |||| || Sbjct 1371968 ACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCCATCCTCA 1371909 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | ||| |||||||||||||| | ||||| |||||||| || ||||| || ||||| || Sbjct 1371908 AGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCCTGA 1371849 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || || |||||| |||| || || || || || ||||||||||| || Sbjct 1371848 ATCTTGGCCTTCACATTATCGATAGTGTCCGAGCTCTCGACCTCAAGAGTAATGGTCTTC 1371789 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || | ||| |||||||| Sbjct 1371788 CCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || | ||||| |||||| ||||||||| |||| | || | | |||| || Sbjct 1372424 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCA 1372365 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | |||||||||||||| |||| || || || ||||| || || || || || ||||| Sbjct 1372364 AGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGA 1372305 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 |||||| || || || || | |||||| ||| || || || |||||||| || Sbjct 1372304 ATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTTG 1372245 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || | || || ||||| Sbjct 1372244 CCAGTCAAGGTCTTGACGAAAATTTGCAT 1372216 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | ||||| |||||| ||| || || || | | || || |||| || Sbjct 1372196 ACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTCG 1372137 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | ||| ||||||||||| |||| ||| || || ||||| || || || || || ||||| Sbjct 1372136 AGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGA 1372077 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || || || || |||| || || || || || ||||||||||| || Sbjct 1372076 ATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTC 1372017 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || | ||| |||||||| Sbjct 1372016 CCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 >seq1199 Length=7341449 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || |||||||| | | || | ||| | ||| | |||||| |||||| ||||| | | Sbjct 1127641 CCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCT 1127700 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | || ||||| || ||||| | | |||||||| |||||| Sbjct 1127701 AGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGT 1127760 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || ||||| || || ||||| || ||||| || | ||| || || || Sbjct 1127761 ATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACC 1127820 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||||||||| || ||||||| ||||| | || |||||||| || Sbjct 1127821 TCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATCTT 1127870 >seq3426 Length=3004207 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| || | | || | ||| | ||||| || || |||||| ||||||| | Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||||| |||| || | ||||| || || ||||| | | || ||||| ||||| Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || || ||||| || || || || || ||||| | | ||| || || || Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACC 2139041 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || |||||||| ||||| |||| ||||| | || ||||||||||| Sbjct 2139040 TCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2138991 >seq557 Length=6368207 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 49821 aaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880 ||||| ||||||||| ||||| |||||| || || || |||| |||||| || ||| Sbjct 1405745 AAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCGAGAAGGTT 1405804 Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATAT 49918 ||||| ||||| || |||| ||||||||||||||| || Sbjct 1405805 AATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAAT 1405842 >seq2419 Length=5026 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | ||||| || |||| || | || || ||||||||||| || | Sbjct 4954 GATGTTGTAATCGGCCAATGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAGCG 4895 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || ||||| || ||||| || |||||||| || ||| || ||||| || | Sbjct 4894 CTGCTGGTCAGGGGGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACATTGTCAATGGT 4835 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || || || || || |||||||| || || || || | || |||| ||| ||||| Sbjct 4834 GTCCGAGCTCTCAACCTCAAGAGTAATAGTCTTGCCTGTAAGGGTCTTAACAAAGATCTG 4775 Query 192534 CAT 192536 ||| Sbjct 4774 CAT 4772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984407521967100