Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq922 143 5e-29 seq461 118 2e-21 seq21 105 1e-17 seq1199 100 5e-16 >seq922 Length=8123900 Score = 143 bits (158), Expect = 5e-29 Identities = 357/534 (67%), Gaps = 16/534 (3%) Strand=Plus/Minus Query 38806 CATTATCACTATTCATCACATTGTAT--TTTTGGTATTCAGAAACttttttttCGAAAAA 38863 ||||| ||| |||||||| || | ||||||||||| ||| | || || || || Sbjct 2994356 CATTAATACTGTTCATCAC--TGAAGCCTTTTGGTATTCTCCAACCCTCTTCTCAAAGAA 2994299 Query 38864 GTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATA 38923 || || || || | | ||| || | | ||| |||||||||| |||| ||| Sbjct 2994298 ATTAGTCTTCCCCTGCAGTGAAATGAGTTCCATCCAATCAAATGGGTTTTGAACCCCATA 2994239 Query 38924 ATATTTTTCTCCTATCAATACATATAATAATCTATCGGCCACAAATTCAACATATTGTAA 38983 ||| || | ||| ||| || | ||||| ||||||||||| | || || Sbjct 2994238 GATTTTATCACACCCCAAAGCATTCAACAGCCTATCAGCCACAAATTCGATGTACTGGCT 2994179 Query 38984 CATTAATTCACAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCttt 39043 ||| | | | ||||| |||| || | | || || |||||| || ||||||| | Sbjct 2994178 CATCAGATTGCCGTTCATTCCCACTAGAGCACAGGGCAAGGCATCACAAACAAATTCTCT 2994119 Query 39044 ttctatttctacagcttgtttaattatcataattatattattttttgat--aatttatat 39101 ||||| ||||||| || | | ||| | || | ||| |||| | || | Sbjct 2994118 CTCTATCTCTACAGATTCCCTTACTATATT--TTGAACGCTTTGTTGAGGGAGCTTGTGG 2994061 Query 39102 ttaatatgattcgcatataGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGAT 39161 || | | ||| |||| || | || |||||||| ||||||||||| || || || Sbjct 2994060 TTTAGAAGAT---CATAGAGAAGGCAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAA 2994004 Query 39162 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 39221 || | ||||||| || ||||| || |||||||| || || ||||| ||||||||||| Sbjct 2994003 ATGAGTTCATTAGAGAAGGTTAAACCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATG 2993944 Query 39222 GATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCT 39281 || |||||||| ||||||||| ||||| || ||||| ||||| || || | || || Sbjct 2993943 GAACAAAAACTACCAGAAAAGAAGATACCTTCAACACAGGCAAAAGCAATCAACCTCTCT 2993884 Query 39282 -CCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCTTTTTT 39334 | ||| ||| | | | | ||||| |||| ||||| ||||||||||| Sbjct 2993883 GCAAAAGATTCA--GAGGAATT--GATCCATTTTAGCGCCCAGTCTGCTTTTTT 2993834 >seq461 Length=5900637 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| || |||||||||||||||||||| |||||||| || || ||||| || Sbjct 2469106 TCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 2469047 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || ||||| || |||||||| ||| || || || || || || || || ||| Sbjct 2469046 TCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACCTCCAGGGTGATG 2468987 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||||| ||||||| || |||||||| Sbjct 2468986 GTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| | | | ||| | || |||||||| || ||||||||||| |||||| Sbjct 2468905 ATGTTATAATCAGCAAGTGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTC 2468846 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || |||||||| || || ||||| || || || || || |||||||| || || Sbjct 2468845 TGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGATGGTG 2468786 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||||| || ||||| ||||| || ||||| || || |||| || |||||| Sbjct 2468785 TCAGAGCTCTCTACCTCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTGC 2468726 Query 172068 AT 172069 || Sbjct 2468725 AT 2468724 Score = 91.5 bits (100), Expect = 3e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||| || | | | || | || |||||||| ||||| |||||||| || || Sbjct 2469590 AATATTATAGTCGGCGAGGGTACGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCT 2469531 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || |||||||| || ||||| || || || || || || || |||||| ||||| Sbjct 2469530 TTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGT 2469471 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| || || || | ||| |||||||||||||| | || || | || || || Sbjct 2469470 GTCTGAACTCTCAACCTCCAAAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTG 2469411 Query 172067 CAT 172069 ||| Sbjct 2469410 CAT 2469408 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || ||||| |||||||| || || | ||||||||||| || || || ||||| || Sbjct 2469790 TCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTG 2469731 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || |||||| || ||||| || || || || || |||||| Sbjct 2469730 TCCTGGATCTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATG 2469671 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | ||||||| || |||||||| Sbjct 2469670 GTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 >seq21 Length=3941259 Score = 105 bits (116), Expect = 1e-17 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG-TCATC 171919 || || || | ||||| |||||| |||||||| || | || | || ||| || || Sbjct 1372424 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTATAGTCAGC-AAGGGTCCTTCCATCCTC 1372366 Query 171920 CAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG 171979 | ||||||||||||||||||| || || |||||||| || || || || || ||||| Sbjct 1372365 AAGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTG 1372306 Query 171980 TATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 |||||| || || || || |||||||| ||| || || || |||||||| || Sbjct 1372305 AATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTT 1372246 Query 172040 ACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || | ||| || ||||| Sbjct 1372245 GCCAGTCAAGGTCTTGACGAAAATTTGCAT 1372216 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || ||||||||||| || || ||||| || |||||||| || || || || ||||| || Sbjct 1372816 TGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTGGATC 1372757 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || | || ||||| || ||||| || ||| ||||| ||||||||||| || || Sbjct 1372756 TTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGTCTTGCCG 1372697 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || | || |||| || ||||||||| Sbjct 1372696 GTCAGGGTCTTAACAAAAATCTGCATT 1372670 Score = 89.7 bits (98), Expect = 9e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || ||||| | ||||| |||||| || || || || | | || || | || || Sbjct 1372196 ACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTCG 1372137 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||| |||||||||||||||| ||| || |||||||| || || || || || ||||| Sbjct 1372136 AGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGA 1372077 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || || || ||||| || || || || || ||||||||||| || Sbjct 1372076 ATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTC 1372017 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || | || |||||||| Sbjct 1372016 CCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| ||||||||||| | ||||| |||||||| || ||||| || |||||||| ||| Sbjct 1372588 TGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTATCTTGAATT 1372529 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || || ||| || ||||| || || || || | |||||||| || ||| Sbjct 1372528 TTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAGGTAATGGTCTTGCCA 1372469 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | || || ||||| Sbjct 1372468 GTCAAGGTTTTGACAAAAATTTGCAT 1372443 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | | || || | || || | ||| ||||||||||| || | ||| Sbjct 1371941 ATATTGTAATCAGCAAGAGTTCTGCCATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTC 1371882 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || ||||| || ||||| || ||||| || || || || |||||| ||||| Sbjct 1371881 TGCTGATCAGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTATCGATAGTG 1371822 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || || || || ||||||||||| || ||||| | || || | || |||||| Sbjct 1371821 TCCGAGCTCTCGACCTCAAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGC 1371762 Query 172068 AT 172069 || Sbjct 1371761 AT 1371760 >seq1199 Length=7341449 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || |||||||||| | || | ||| | ||| | |||||| ||||| ||||| | | Sbjct 1127641 CCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCT 1127700 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | ||| | || || | || ||||| || || || | | ||||| || |||||| Sbjct 1127701 AGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGT 1127760 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || ||||| || || ||||| || ||||| || ||||| || || || Sbjct 1127761 ATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACC 1127820 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||||||||| || ||||||| ||||| | ||| |||||||| || Sbjct 1127821 TCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATCTT 1127870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905070988606800