Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1199 105 2e-17 seq2 104 7e-17 seq1809 95.1 4e-14 seq5085 89.7 2e-12 >seq1199 Length=7341449 Score = 105 bits (116), Expect = 2e-17 Identities = 175/252 (69%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 156045 AAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| |||| ||||||||||| ||| ||||| ||||| |||||||| | |||||| || Sbjct 5064262 AAATTACCCTTCCTCTTGCCTCCCCCTTGATCGACATAACGAGCAGTGTCATTGAACACT 5064321 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | |||||| |||| || ||||| || |||||||| || || ||||| | || || Sbjct 5064322 CGTAGCATTGGAACTATCCCATTAGATGTGCCATTTGTACCACGAATGTAGCTACTAGTA 5064381 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | |||| |||||| | | | ||||| || |||| |||| ||| ||| || Sbjct 5064382 GCTCGAATATTATGGACAGAAACACCAATGCCTCCTGCTGATTTGCTAATAACAGCACAC 5064441 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCAC 156281 ||||| | |||| | ||||| ||||| ||| |||| ||| | | ||| |||| Sbjct 5064442 TCCTTGAGGGTATCATATATACCCTCAATGCTATCTTCTTTCATACACACAAGAAAGCAG 5064501 Query 156282 GAACTTAATTGA 156293 ||||| ||| Sbjct 5064502 CTGCTTAACTGA 5064513 >seq2 Length=3967838 Score = 104 bits (114), Expect = 7e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| | ||||| | | ||| |||||||| || || |||||| | |||| | ||| Sbjct 3064772 GCGATTAAGCCACATTGTTCACAAACATGGACCCTATAGGCATCACTTTGGTCAAAAAGC 3064713 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| |||| ||| || || || | ||||| |||||||||||||| || || Sbjct 3064712 CTCTCCTTAAGGAAGTGAGCAGCCCCATGGGCTATCATGCAATCACGCTCCATCTCTCCA 3064653 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 || ||||| || ||||| |||| ||| ||||| |||||||| | ||||| Sbjct 3064652 AAGCGAAGGCCTCCATCACGAGACCTTCCCTCAGCAGGCTGCCTCGTGAG 3064603 >seq1809 Length=9585472 Score = 95.1 bits (104), Expect = 4e-14 Identities = 303/465 (65%), Gaps = 9/465 (2%) Strand=Plus/Minus Query 288882 GTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAA 288941 |||||| ||||| | ||||| || |||| | |||||| | | | ||| ||| Sbjct 7037072 GTCTAAAATATCTGGCCTGTTAGTGCCTGCAAGTACAACTACTCCTGCAGTTGTACCAAA 7037013 Query 288942 TCCATCCATACTTGTTAAAATT--TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 |||||||| || || | ||||| || || ||| | ||||||||||| ||| Sbjct 7037012 CCCATCCAT--TTCCACAAGTAACTGATTGAGAGTGCTTTCACGTTCATCATTTGCACC- 7036956 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 ||| ||| | | |||| | ||||| ||||||||| || ||||| || || Sbjct 7036955 --AGAAAATCCCCCACGTCCCCTTGCTCGACCAATAGCATCAATCTCATCAATAAATATA 7036898 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | | || | | ||| || || | |||||| || || | || | ||||| | Sbjct 7036897 ATGCTAGGTGCACATTGCCTAGCTTCTTGAAATAAACTCCTCACTCTTGAAGGTCCAACA 7036838 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 |||||| ||||||| | ||| || ||| | || | |||| | |||| ||| | ||| Sbjct 7036837 CCAACAAACATTTCCATAAAATCTGAACCAGA-AATTGATAGAAATGGCACACCCGATTC 7036779 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || || | || ||||| ||||| || || ||||| |||||| | | || | Sbjct 7036778 ACCAGCAGTAGCTTTTGCAAGAAGAGTCTTTCCAGTGCCAGGAGGTCCCACAAGAAGGGC 7036719 Query 289239 TCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTAC 289298 ||| ||||| | ||| || || || |||||||| || |||| | ||| | || Sbjct 7036718 TCCTTTTGGAATTTTAGCACCTAATTCCTCATATTTCTTTGGATTCTTCAGAAAATGGAC 7036659 Query 289299 AATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || ||| || || | ||||| |||||||| || || ||||| Sbjct 7036658 AAACTCCATAATCTCCTGCTTTGCTTCATCACAGCCAGCAACATC 7036614 >seq5085 Length=15980527 Score = 89.7 bits (98), Expect = 2e-12 Identities = 169/248 (68%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || || || |||||| ||||| ||||| | ||||| | ||||||||||| | Sbjct 1680995 TACCTTTTCTTTTCCCACCCCCTTGATCAACATATCTTGCAGTATCATTGAAGACACGCA 1681054 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| || || || ||||| || | ||||| || || || |||| || | ||| | Sbjct 1681055 GCATTGGGATTATGCCATTTGAGGCACCATTTGTACCACGTATATAACTTCCTGTTGATC 1681114 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | |||||| | | || |||||||| || | |||| ||| || || |||| Sbjct 1681115 TGATATTATGGACAGAAAGGCCAATACCTCCAGCTGATTTGCTAATGACTGCACACTCCT 1681174 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 | | |||||| | ||||| |||||| ||| |||| ||| | | ||| |||| || Sbjct 1681175 TCAGTGTATTGTATATACCCTCAATACCATCCTCTTTCATGCACACAAGAAAGCAGCTAC 1681234 Query 156286 TTAATTGA 156293 | || ||| Sbjct 1681235 TCAACTGA 1681242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471709243868402