Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2419 129 5e-25 seq461 125 6e-24 seq21 109 5e-19 seq3426 107 2e-18 seq1199 100 3e-16 seq5085 89.7 5e-13 >seq2419 Length=5026 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| |||| || || || || || |||||||| || || || || | | Sbjct 4771 GATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACTATTACTCTTGAGGTTGAGAGCTC 4830 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||||||||| || || ||||| || || || || Sbjct 4831 GGACACCATTGACAATGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCCCCTGACCA 4890 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||||||| || || ||||| |||||| | | || | ||||| || Sbjct 4891 GCAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACATTGGCCGATTACAA 4950 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| |||||||| ||||| || ||| | || | |||||| | |||||| Sbjct 4951 CATCCAAAAGGAGTCGACCCTTCACCTTGTCCTCCGATTGAGGGGAGGC 4999 >seq461 Length=5900637 Score = 125 bits (138), Expect = 6e-24 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| ||||| || || || || || || || || || | | Sbjct 2469180 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACAATCACCCTTGAGGTCGAGAGCTCA 2469239 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| |||||||| ||||| ||||| || ||||||||||| Sbjct 2469240 GATACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGATCAG 2469299 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTATA 24881 ||| | | |||||||| ||||| ||| |||||||| ||| | | || ||||||| | Sbjct 2469300 CAAAGGCTCATCTTTGCTGGGAAGCAGTTGGAGGATGGTCG-CACTCTTG-CAGATTACA 2469357 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||||||||||| || || || ||||||||| Sbjct 2469358 ACATTCAAAAGGAGTCTACCCTTCACTTGGTG 2469389 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| ||||||| ||||| || ||||| || || || || || || | | Sbjct 2468952 ATGCAGATCTTTGTTAAAACCCTAACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCT 2469011 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| | ||||| |||||| || ||||| ||||| || || || || || Sbjct 2469012 GACACCATAGACAATGTAAAGGCAAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAG 2469071 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | || || ||||| || || || |||||||| | | | | || |||||| Sbjct 2469072 CAGAGATTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTGCTGACTATAAC 2469131 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || |||||||| || ||||| ||| Sbjct 2469132 ATCCAAAAGGAGTCCACACTCCAC 2469155 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || | || || || || || || ||||| ||||| | | Sbjct 2468724 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTCGAGGTAGAGAGCTCT 2468783 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||||||| ||||| ||||| || || || || || Sbjct 2468784 GACACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 2468843 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 || | ||||| ||||| || || || |||| || | || ||| | | |||||||| Sbjct 2468844 CAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGA-TGGACGTACACTTGCTGATTATAA 2468902 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || ||||| || ||||| ||| Sbjct 2468903 CATCCAGAAGGAGTCCACACTCCAC 2468927 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| ||||||| || || || || || ||||| || || || || | | Sbjct 2469636 ATGCAGATCTTTGTTAAAACCCTGACTGGAAAGACCATTACCCTGGAGGTTGAGAGCTCG 2469695 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| ||||| ||||| || |||||||| ||| Sbjct 2469696 GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAA 2469755 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || || || || | |||||| | | | | || || ||| Sbjct 2469756 CAGAGGCTCATCTTCGCTGGTAAGCAATTAGAGGATGGTCGTACTCTCGCGGACTACAAC 2469815 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||| || || || |||||||| Sbjct 2469816 ATTCAAAAGGAGTCCACCCTCCACTTGGT 2469844 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || ||||| || || || | || || || | | Sbjct 2469864 ATGCAAATTTTTGTCAAGACCCTGACTGGTAAGACGATCACATTGGAGGTTGAGAGCTCG 2469923 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||| || ||||| ||||| || ||||| || || Sbjct 2469924 GACACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAG 2469983 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||||||||||| || || |||||||| || | || | ||||| || Sbjct 2469984 CAAAGGCTGATCTTTGCCGGCAAGCAATTGGAGGATGGAAGGACTCTGGCTGATTACAAT 2470043 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || || ||||| Sbjct 2470044 ATCCAGAAGGAGTCCACCCTCCATTTGGT 2470072 >seq21 Length=3941259 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| |||| || || ||||| || || ||||| || ||||| ||| | | Sbjct 1372671 ATGCAGATTTTTGTTAAGACCCTGACCGGCAAGACCATTACTCTTGAAGTGGAAAGCTCG 1372730 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||||||||| || || || || || ||||| Sbjct 1372731 GATACCATTGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGGATTCCACCTGATCAG 1372790 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || ||||| |||||| | | | || | || || || Sbjct 1372791 CAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCCTGGCGGACTACAAT 1372850 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || || |||||| Sbjct 1372851 ATCCAGAAGGAGTCCACCCTCCATTTGGTG 1372880 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || ||||| || || || || | | Sbjct 1371759 GATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTTGAGGTCGAGAGCTC 1371818 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || || || || ||||| || || ||||| Sbjct 1371819 GGACACTATCGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCTGATCA 1371878 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || || || || |||||| |||| | | ||||| || Sbjct 1371879 GCAGAGGCTCATCTTTGCTGGTAAGCAACTTGAGGATGGCAGAACTCTTGCTGATTACAA 1371938 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTG 24913 || |||||||| || ||||||||||||||| Sbjct 1371939 TATCCAAAAGGAGTCCACACTACACTTGGTG 1371969 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || ||||| ||||| || || | | Sbjct 1371987 GATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTCGAGGTCGAGAGCTC 1372046 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| |||||||| || || || ||||| || || Sbjct 1372047 TGACACTATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCA 1372106 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 ||| | | || ||||| || || || || |||||| ||| || | || | || || Sbjct 1372107 GCAAAGACTAATTTTTGCTGGTAAGCAACTCGAGGATGGTCG-GACTCTTG-CCGACTAC 1372164 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| || || || || || || || |||||| Sbjct 1372165 AACATCCAGAAAGAGTCTACTCTCCATTTGGTG 1372197 >seq3426 Length=3004207 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || | | Sbjct 2138994 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTTGAGGTCGAGAGCTCT 2139053 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||||| || | || || |||||||| |||||||| || || || || ||||| Sbjct 2139054 GATACAGTTGACAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGATCAG 2139113 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| | ||||| || || |||||||| || ||| ||| | | ||||| || Sbjct 2139114 CAACGCCTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGAACACTAGCTGATTACAAT 2139173 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||| || || || |||| || || | | ||||| Sbjct 2139174 ATCCAGAAGGAATCTACTCTTCATCTGGTTCTGAGACTCAGAGGAGG 2139220 >seq1199 Length=7341449 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| ||||| || || || ||||| || || || || | | Sbjct 1127868 GATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGCTC 1127809 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || || || ||||| |||||||| || ||||| || ||||| Sbjct 1127808 CGATACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGATCA 1127749 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | ||||| || || || ||||| || ||| ||| | | | ||||| || Sbjct 1127748 ACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTACAA 1127689 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || ||||| || || |||| || || | | ||||| Sbjct 1127688 TATCCAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGAGGAGG 1127641 >seq5085 Length=15980527 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 138862 GGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGA 138921 ||||||| |||| |||| | || || || |||||||| || | ||| | || ||| Sbjct 1679047 GGCATGCCCAGCAATATGAAAGTATCAGCAAGGCCTTGCACTCCAATTCCAATTGGACGA 1679106 Query 138922 TGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTG 138981 |||| || ||||||| | |||| | ||| | ||||||| |||| ||||| ||||||||| Sbjct 1679107 TGGCACATATTTGACTTTCTTGCAGTTTCAACAGGATAAAAGTTGACATCAATGATTTTG 1679166 Query 138982 TTTAAATTT 138990 || | |||| Sbjct 1679167 TTGAGATTT 1679175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449865286104880