Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq461 98.7 8e-16 seq1199 84.2 2e-11 >seq461 Length=5900637 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| || |||||||| |||| || || || || ||| | || ||| || | Sbjct 2469180 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACAATCACCCTTGAGGTCGAGAGCTCA 2469239 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | | ||||| ||||| ||||| ||||| | || ||||| Sbjct 2469240 -GATACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGATCA 2469298 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| || || | ||| || || ||| ||||||||| | || | || |||||||| Sbjct 2469299 GCAAAGGCTCATCTTTGCTGGGAAGCAGTTGGAGGATGGTCGCACTCTTGCAGATTACAA 2469358 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||| || ||||| | ||| ||||| | || || ||||| || Sbjct 2469359 CATTCAAAAGGAGTCTACCCTTCACTTGGTGCTCAGGCTTCGAGGCGG 2469406 >seq1199 Length=7341449 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 || || ||||| || || || ||||| |||| ||||| |||||||| | || ||| Sbjct 1127873 TTGAAGATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAG 1127814 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 |||||| ||| | | || || || || |||||||| ||| | || Sbjct 1127813 AGCTCCGATACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCA 1127754 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||||||| | || || | || ||||| ||||| || |||| | |||| | |||||| Sbjct 1127753 GATCAACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGAT 1127694 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||||| || || ||||| || || | || |||| | ||||| |||| ||| Sbjct 1127693 TACAATATCCAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGAGGAGGA 1127640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412812688960778