Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq922 107 3e-17 >seq922 Length=8123900 Score = 107 bits (118), Expect = 3e-17 Identities = 200/289 (69%), Gaps = 11/289 (4%) Strand=Plus/Minus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || ||||| | || | || || |||||||| |||| ||| ||||| || || || ||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCC-AGGCCCTCTTT 794498 || || || || |||||| | | | || ||| ||||||| || ||| Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAA------ 2993866 Query 794499 GTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 |||||||| || | |||||| ||||| ||||| || |||| ||||| || | || Sbjct 2993865 -TTGATCCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGC 2993807 Query 794559 GCGAAAGAGGTGGTCCTTCTCGACCGGG-TCCTTGACGTAGGTGTCGATGAGGAGCGAGT 794617 | || | | |||||| || || ||||||| ||| | || | | ||| || Sbjct 2993806 CCTGAACAATCGACTCTTCTC-ACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGT 2993748 Query 794618 AGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA-AAAGC 794665 | |||| |||||||||||||| |||||||||||||||||||| ||||| Sbjct 2993747 ACATCTCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGC 2993699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915635171772494