Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1199 118 7e-22 seq461 118 7e-22 seq3426 104 2e-17 seq21 104 2e-17 >seq1199 Length=7341449 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 |||||| || | ||||| ||||| |||| || ||| ||||| || || || |||| Sbjct 1127640 TCCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGC 1127699 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 |||| | || |||| || || ||||| || |||||||| || ||||| || ||| | || Sbjct 1127700 TAGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGG 1127759 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | ||||| ||||| | ||||| ||||| | |||| || | |||||| Sbjct 1127760 TATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGAC 1127819 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || |||||||| || || ||||| ||||| ||||||||||| Sbjct 1127820 CTCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 1127867 >seq461 Length=5900637 Score = 118 bits (130), Expect = 7e-22 Identities = 168/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | ||| ||||| ||||| | ||| ||||||||| |||||||| || | Sbjct 2468950 CCACCCCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 2468891 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| |||| ||||||||| || || |||| || |||||||| | || Sbjct 2468890 AGTGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGG 2468831 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | || |||||||| | || ||| || || || | ||||| ||| | ||| Sbjct 2468830 ATGCCTTCCTTGTCCTGGATCTTTGCCTTTAC--AT--TGTCGATGGTGTCAGAGCTCTC 2468775 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || || | || ||||||||||| || | |||||| ||||||||||||||||| Sbjct 2468774 TACCTCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTGCATGAT 2468721 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | ||| ||||| ||||| | ||| |||||| || ||||||||||| | Sbjct 2469178 CCACCCCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATAGTCAGCA 2469119 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| |||| ||||||||| || || || | || |||||||| | || Sbjct 2469118 AGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGA 2469059 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | ||| ||| || || |||| | ||| | ||| || Sbjct 2469058 ATGCCTTCCTTGTCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACC 2468999 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| ||||| || || || ||||| || |||||||||||||| Sbjct 2468998 TCCAGGGTGATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||| ||| | |||| |||||| |||||||| ||||||| || | || | Sbjct 2469851 CCTGAGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACC 2469792 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || | |||||| || |||||||| || | || ||||| | || | ||| ||||| Sbjct 2469791 ATCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTT 2469732 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGG 34937 ||| | || ||| ||||| || |||| || || | ||| || || | || Sbjct 2469731 GTCCTGGATCTTTGCCTTGAC--AT--TATCAATGGTATCCGAGCTCTCAACCTCCAGGG 2469676 Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | ||||||||||| || ||||| || |||||||||||||| Sbjct 2469675 TAATGGTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| || |||| |||| ||||||||| || || || || | ||| | | | |||| Sbjct 2470304 CAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATC 2470245 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| || | ||||||||| | || | ||||||||||| Sbjct 2470244 TTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTC 2470185 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| ||||| | || | || | ||| || |||| ||| ||||| Sbjct 2470184 CTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCACCTCAAGGGTAATGGT 2470125 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||| || || ||||| ||||| ||||||||| Sbjct 2470124 CTTTCCAGTAAGAGTCTTAACAAAAATCTGCATG 2470091 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||||||| ||||||| || | |||| ||||||||| || || || || | Sbjct 2470090 CCACCCCTCAACCTGAGGACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCC 2470031 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| |||| |||||| ||||| |||||||| | ||||||||| | || Sbjct 2470030 AGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGG 2469971 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | || |||||||| | || ||| || || || ||||||| || | ||| Sbjct 2469970 ATGCCTTCCTTGTCCTGAATCTTTGACTTCAC--AT--TATCGATGGTGTCCGAGCTCTC 2469915 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || || ||||| || || |||||||| ||||| || ||||| Sbjct 2469914 AACCTCCAATGTGATCGTCTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/223 (70%), Gaps = 12/223 (5%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || ||||| || | ||| |||||||||||| |||||||| | ||| | || | Sbjct 2469623 CCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCGAGGGTACGGCC 2469564 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| |||| |||||| ||||| || |||| | ||||||||| | || | |||||||| Sbjct 2469563 ATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCCTCCTT 2469504 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGC------CTCGACATCAAC 34935 ||| | || || || || || |||| || | || | ||| || || | Sbjct 2469503 GTCCTGGATCTTGGCCTTAAC--AT--TATCAAT--AGTGTCTGAACTCTCAACCTCCAA 2469450 Query 34936 GGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || ||||| || || ||||||||||| ||||| || |||||| Sbjct 2469449 AGTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGCATG 2469407 >seq3426 Length=3004207 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| || | ||||| ||||| |||| || |||||||| || || || || | | Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| || || || || || |||||||| || |||||||| ||| | || Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | || || ||||| | | | ||| | |||||| Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACC 2139041 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| |||||||| ||||| ||||| || || ||||||||||| Sbjct 2139040 TCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2138994 >seq21 Length=3941259 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| ||||| | || | || |||| || |||||||| || || || Sbjct 1372179 CTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTCGAGTTGCTTACCAGCAAA 1372120 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || |||| ||||||||| | || | ||||||||||| | || || || ||| Sbjct 1372119 AATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTT 1372060 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| | |||||| || | || |||||||| || ||||||||||| || Sbjct 1372059 GTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTCCCAGTGAGGGTCTTGAC 1372000 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 1371999 AAAGATCTGCAT 1371988 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||| ||| | ||| |||||| || || || || || | || | | | Sbjct 1371975 CCTGAGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCC 1371916 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| || |||||||| || || ||||| || | ||||| || | || | |||||||| Sbjct 1371915 ATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTT 1371856 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGG 34937 || | || || || || || ||||||| || | |||||| |||| | Sbjct 1371855 ATCCTGAATCTTGGCCTTCAC--AT--TATCGATAGTGTCCGAGCTCTCGACCTCAAGAG 1371800 Query 34938 TTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||||||| || ||||||||||| |||||||||||||| Sbjct 1371799 TAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325669991936774