Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq21 105 5e-18 seq461 84.2 2e-11 >seq21 Length=3941259 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||||||||| || || ||||| ||||||||| | || ||| ||| | Sbjct 1372443 ATGCAAATTTTTGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAGGTTGAGAGCTCG 1372502 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || || ||| ||||| || || | || || || Sbjct 1372503 -GATACAATTGATAACGTGAAGGCCAAAATTCAAGATAAGGAGGGAATCCCGCCTGACCA 1372561 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||||| ||| || |||||||| ||||| | | || | || |||||||| Sbjct 1372562 GCAGAGGCTTATTTTTGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCCGACTACAA 1372621 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || |||||||| || | || |||||||||| | || || |||| Sbjct 1372622 TATCCAGAAGGAGTCCACACTCCATTTGGTGTTGAGGCTCCGTGGAGGAA 1372671 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | || || || |||||||| | || ||| ||| | Sbjct 1371760 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTTGAGGTCGAGAGCTCG 1371819 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | || || |||||| ||||| || || | ||| ||||| Sbjct 1371820 -GACACTATCGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCTGATCA 1371878 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| ||||| || || ||||| | || ||| | || || ||||| Sbjct 1371879 GCAGAGGCTCATCTTTGCTGGTAAGCAACTTGAGGATGGCAGAACTCTTGCTGATTACAA 1371938 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || ||||||||||| || | ||| ||||| | || | || ||||| Sbjct 1371939 TATCCAAAAGGAGTCCACACTACACTTGGTGCTCAGGCTTCGTGGGGG 1371986 >seq461 Length=5900637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || |||||||| |||| || || || || ||| | || ||| ||| Sbjct 2469180 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACAATCACCCTTGAGGTCGAGAGCTCA 2469239 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | ||||| ||||| || || ||||| | || ||||| Sbjct 2469240 -GATACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGATCA 2469298 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || || ||| ||||||| | || | || || ||||| Sbjct 2469299 GCAAAGGCTCATCTTTGCTGGGAAGCAGTTGGAGGATGGTCGCACTCTTGCAGATTACAA 2469358 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||||||| | ||| ||||| | || | ||||| || Sbjct 2469359 CATTCAAAAGGAGTCTACCCTTCACTTGGTGCTCAGGCTTCGAGGCGG 2469406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398848866906994