Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq21 150 1e-31 seq461 132 4e-26 seq1199 127 2e-24 seq2419 125 6e-24 seq3426 118 8e-22 >seq21 Length=3941259 Score = 150 bits (166), Expect = 1e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| || ||||| || || || || || || ||||| | ||| ||| | Sbjct 1372885 CGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCA 1372826 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || || |||||| | ||||| || |||||||| || ||||| ||||| ||| Sbjct 1372825 TCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTG 1372766 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | | || || || ||| | || | || || || ||| ||||||||||| || Sbjct 1372765 TCTTGGA-TCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAAT 1372707 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || | ||| |||||||| ||||||||| Sbjct 1372706 GGTCTTGCCGGTCAGGGTCTTAACAAAAATCTGCATT 1372670 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||||||||| || || || ||||| || ||||| || || |||| || ||| ||| Sbjct 1372199 AGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCC 1372140 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 |||||||| || |||||| | || | ||||||||| || || ||||||||||| |||||| Sbjct 1372139 TCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCT 1372080 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | || || | || | ||||||||| || || || ||||| || || Sbjct 1372079 TG-AATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGT 1372021 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | ||| || ||||| |||||||| Sbjct 1372020 CTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| ||||| || || ||||| || || ||||| || |||| ||| | ||| || Sbjct 1372424 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCA 1372365 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 || ||||| |||||| | || | |||||||| || || ||||||||||| |||||||| Sbjct 1372364 AGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTG- 1372306 Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 |||||| | || || | || | || || || ||| || || || || || || || Sbjct 1372305 AATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTT 1372246 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| ||||| || || || || ||||| Sbjct 1372245 GCCAGTCAAGGTCTTGACGAAAATTTGCAT 1372216 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||||||||| || ||||| || || || || || || || |||| ||| || ||| Sbjct 1372655 CAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCATC 1372596 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || |||||||||||| | || | || ||||| || ||||| || ||||| || || Sbjct 1372595 CTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTATC 1372536 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| |||||| | || || | || | || || || || || || | || || | Sbjct 1372535 TTG-AATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAGGTAATGG 1372477 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| |||||||| ||||| || ||||| Sbjct 1372476 TCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 >seq461 Length=5900637 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||| || ||||| |||||||| || |||| || || ||| || | ||| Sbjct 2469154 TGGAGTGTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGC 2469095 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | || ||||| ||||| || || ||||| || || ||||| |||| ||| Sbjct 2469094 TTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTT 2469035 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | |||| |||||||| || || || || || || ||||| |||||| Sbjct 2469034 GCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTT 2468975 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | |||||||||||| |||||||| Sbjct 2468974 AGGGTTTTAACAAAGATCTGCAT 2468952 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || ||||| || || || ||||||||||| |||| || || ||| || | ||| Sbjct 2468926 TGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCAAGTGTACGTCCATCTTCCAATTGC 2468867 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | |||||||| ||||| || || || || || || ||||| || | ||| Sbjct 2468866 TTTCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTT 2468807 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| | || | |||||||| ||||| || ||||| || || || ||||| Sbjct 2468806 GCCTTTACATTGTCGATGGTGTCAGAGCTCTCTACCTCGAGAGTGATGGTCTTTCCAGTC 2468747 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 ||||| |||||||| |||||||| Sbjct 2468746 AAGGTCTTAACAAAGATCTGCAT 2468724 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 |||||||| ||||| || || || ||||||||||| ||||| |||| |||||| ||| Sbjct 2469391 AGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCAAGAGTGCGACCATCC 2469332 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | || || |||||| | || | ||||||||||| || || || || || ||||| Sbjct 2469331 TCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGGATCCCTTCCTTGTCC 2469272 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || || ||| | || | ||| || || || || ||||| || || || Sbjct 2469271 TGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACCTCAAGGGTGATTGTC 2469212 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||||| |||||| || || || ||||| Sbjct 2469211 TTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || ||||| || ||||||||||| || ||||| | || ||| ||| Sbjct 2469847 AGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCATCC 2469788 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||| || ||||| | || | || || || || || || || || || ||||| Sbjct 2469787 TCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCC 2469728 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||| |||||| | || | || || || || || || || || || || Sbjct 2469727 TGGATCTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTC 2469668 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | |||||||||||| |||||||| Sbjct 2469667 TTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 >seq1199 Length=7341449 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | | ||| |||| |||||| || || ||||| || || || |||||||| Sbjct 1127640 TCCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGC 1127699 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || ||| ||||| || || || || | || | | ||| ||||| || || Sbjct 1127700 TAGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGG 1127759 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||||||||| || | ||| |||||| | || | || || || || || Sbjct 1127760 TATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGAC 1127819 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 |||||||| || || |||||||||| |||||| || || |||||||| || ||| Sbjct 1127820 CTCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATCTTCAAA 1127874 >seq2419 Length=5026 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| || || || | ||||| || || || ||||| ||||| ||||| || Sbjct 4998 CCTCCCCTCAATCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCC 4939 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| ||||| || || |||||| | ||||| | ||||| || || || Sbjct 4938 AATGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGGGGG 4879 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || ||||| | || || ||| | || | ||||| || || || Sbjct 4878 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCCGAGCTCTCAACC 4819 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| ||||| ||||| || | ||| |||||||| |||||||| Sbjct 4818 TCAAGAGTAATAGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 4772 >seq3426 Length=3004207 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | | ||| |||| |||||| || ||||| || || || || ||||| || Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || |||||||| || | || | | ||||||||| || || Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | || |||||| | || || || ||||| || || Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACC 2139041 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||| || || || || || |||| |||||| || || ||||||||||| Sbjct 2139040 TCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2138991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385192223340186