Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq5746 91.5 5e-14 seq639 91.5 5e-14 >seq5746 Length=162686 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 41750 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 41809 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 41810 TGCTCTACCCCGC 41822 >seq639 Length=5405 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| ||||||||||||||| | |||| ||| ||||||||| |||||||||| | | Sbjct 2623 TTGCGGAGACGGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAGC 2564 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 2563 TGCTCTACCCCGC 2551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181590808532652