Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3275 161 7e-34 seq233 120 2e-21 seq2710 96.9 3e-14 seq5444 87.8 1e-11 >seq3275 Length=3666727 Score = 161 bits (178), Expect = 7e-34 Identities = 538/824 (65%), Gaps = 20/824 (2%) Strand=Plus/Minus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||| || || | |||||| || |||||||| ||||||| | || Sbjct 3066943 GTCATGACACCACCAGCAGTCTCAAGACCAAGGGAGAGAGGAGTAACATCAAGCAAGAGG 3066884 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | | ||| | || |||| | ||| || || || || || | ||| |||||| Sbjct 3066883 AGGTCTTGGACCTTCTCATTGCCCTCTCCACTGAGGATGGCAGCCTGGACAGCTGCACCA 3066824 Query 281783 TATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 || || ||||| ||||| || || | | || || || | || ||||||||||| | Sbjct 3066823 TAGGCCACAGCCTCATCTGGGTTGATGCTCTTGCAG--AGCTCCTTCCCATTGAAAAAGT 3066766 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 | || ||||| ||| | || ||||| | || || ||||| || |||| |||| Sbjct 3066765 CTTGGAGGAGTTGCTGGACCCTTGGGATACGGGTCGAGCCACCAACCAAGACAACATCAT 3066706 Query 281901 GCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTT-TCAACGGGTTCAAGACC 281958 | | ||| | || |||| || | ||| | || | || ||||| ||||| | || Sbjct 3066705 GGATG-GTGTTCTTGTCCATCTTAGCATC-ACGAAGGCACTTCTCAACTGGTTCCATACA 3066648 Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 282018 || || | ||| ||| || |||||| | |||| || | || | | || | Sbjct 3066647 CTTCCTGAAGAGGTCCATGTTAAGCTCCTCGAATCTGGCTCGGGTGATGGT-AGAGTAGA 3066589 Query 282019 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | ||||| || || | | ||| |||| ||||| || || || | | || || || | Sbjct 3066588 AATCAATACCCTCATAGAGAGAGTCAATCTCAATGGTGGTCTGGGCGGTGGATGAAAGGG 3066529 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATT 282135 ||| || || | ||||| | ||||| | || || | || | |||| | | Sbjct 3066528 TACGCTTGGCCCTCTCACAAGAGGTCCTCAATCGACGGAGAGCACGAG--GATTTCCACT 3066471 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 | ||| | || | ||| ||||| || || | ||| | | || | | || || Sbjct 3066470 GATATCCTTCTTGTGTTTCCTCTTAAATTCCTGAACGAAGTGGTTCACCATCCTGTTGTC 3066411 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||| || ||||| ||||| | |||| || | || | | || | |||| ||| || Sbjct 3066410 AAAGTCCTCACCACCCAAGTGGGTATCACCAGCAGTTGACTTGACCTCAAAAATTCCCTC 3066351 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 |||| | | ||||| |||||| || |||||||||| |||||| || | |||||| Sbjct 3066350 CTCAATGGTGAGAAGAGAGACATCAAAAGTGCCACCACCCAAATCAAAGATCAATACATT 3066291 Query 282316 CATTTCTTTGTCT-TGGTTT-----TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 | | || | ||||| || ||||||||||| |||| ||||||||| || || Sbjct 3066290 CTTCTCACCCACACTGGTTGCCTTCTTGTCAAGACCATAGGCAATAGCAGCAGCTGTGGG 3066231 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 ||||| || || | || ||||| || |||||||| || ||||| |||||||| || Sbjct 3066230 CTCATTGATGATACGCATGACATTGAGGCCAGCAATGACACCAGCATCCTTAGTGGCCTG 3066171 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 | || || || || ||||| ||||| || || | ||| |||| Sbjct 3066170 GCGCTGGGAGTCATTGAAATAGGCAGGGACTGTGACAACTGCAT 3066127 >seq233 Length=5158861 Score = 120 bits (132), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||||||||| || || ||||| ||||| ||| ||||| |||||||||| Sbjct 4860360 CCATAGGACAGAGCAGCAGCTGTGGGCTCATTGATAATCCTCTGAACATCAAGACCAGCA 4860301 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 |||||||||||||| || || || || || || | ||| |||||||| || || || || Sbjct 4860300 ATTCTTCCTGCATCCTTTGTTGCCTGCCTCTGCGCATCATTAAAATAGGCTGGGACTGTG 4860241 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTTGTTTCATTTTAC 282521 || || || | || || ||| |||| || || || ||||||| |||||||| Sbjct 4860240 ATCACAGCTTTGGTCACAGATTTCCCAAGGTA--CGATTCAGCTGTTTCCTTCATTTTTG 4860183 Query 282522 TTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG 282558 | |||| | | |||||| |||||||||||| Sbjct 4860182 TCAAAACAAAGGCCCCAATTTGGCTTGGAGAATATTG 4860146 >seq2710 Length=11522362 Score = 96.9 bits (106), Expect = 3e-14 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 281303 TTGTTATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCA 281362 || ||||| ||||| ||||||| | ||||| |||| |||||||||||| | |||| | Sbjct 1161279 TTCTTATCCTCTTCTGCAAATTCCTCTGCTTCCCTAACCATTCTCTCAATCTCCTCTTGA 1161220 Query 281363 GAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCA 281422 || ||||| | || || || || || |||| | || || || ||| || Sbjct 1161219 CTGAGCCTTCCCTTGTCGTTGGTGATGGTGATCTTCTCAGCCTTCTTCGTACCTTTGTCT 1161160 Query 281423 GCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGG 281482 | || | ||||| | |||||||||||||| | || || ||||||||||||||||| Sbjct 1161159 TCTGCTCTAACATTCAAGATACCATTGGCATCAACCTCGAAGGTGACTTCAATTTGAGGT 1161100 Query 281483 ACCCCTCT 281490 || ||||| Sbjct 1161099 ACTCCTCT 1161092 Score = 91.5 bits (100), Expect = 1e-12 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 || || || || || ||||||| || || | ||||| | ||||| |||| || Sbjct 1157606 CCGATCAAACGCTTAACATCAAAGATCGTCCTCTCAGGATTGAGAGCAGCCTGATTCTTA 1157547 Query 282731 GCTGCATCTCCAATCAGATGT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 ||||| ||||| | || || | ||||| || ||||| | || |||||||||| | | Sbjct 1157546 GCTGCCTCTCCCACCA-ATCTCTCTGTATCGGTAAAAGCCACCCATGATGGAGTGATCCT 1157488 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 |||||| ||||||||||| ||||| || || | ||||| | | || || ||||| Sbjct 1157487 ATTACCCTGATCATTCGCTATAATCTCCACATGTCCATTCTTGTAAACTCCGACACATGA 1157428 Query 282850 AAAAGTTGTTCCTAAATCAATACCAAT 282876 | | |||||||| | |||||| || || Sbjct 1157427 ATACGTTGTTCCAAGATCAATTCCTAT 1157401 >seq5444 Length=9389330 Score = 87.8 bits (96), Expect = 1e-11 Identities = 140/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 282682 TTTTG-CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTC 282740 ||||| ||||||| ||||| | || || || || || |||| || || || || | Sbjct 8246904 TTTTGACATCAAAGATAGTTCTTTCTGCGTTGACAGCGGCCTGATTCTTTGCAGCCTCAC 8246963 Query 282741 CAATCAGATGT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799 |||||| || | || || || ||||||| || | ||||| || | ||||| |||||| Sbjct 8246964 CAATCA-ATCTCTCAGTGTCAGTAAATGCCACCCAAGATGGGGTGATCCGATTTCCTTGA 8247022 Query 282800 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 282859 ||||| || || ||||| || | |||| | | | ||||| ||||| |||| ||| Sbjct 8247023 TCATTGGCTATGATTTCCACATGACCACTCTTATAGACACCAACACATGAGTAAGTAGTT 8247082 Query 282860 CCTAAATCAATACCAAT 282876 || | |||||| ||||| Sbjct 8247083 CCAAGATCAATTCCAAT 8247099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740348295682596