Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq21 143 5e-29 seq461 141 2e-28 seq1199 138 2e-27 seq3426 136 8e-27 seq3001 120 6e-22 seq2419 120 6e-22 seq3275 98.7 2e-15 >seq21 Length=3941259 Score = 143 bits (158), Expect = 5e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || |||||||| |||||||| || || || || | ||| | | ||| || Sbjct 1372199 AGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCC 1372140 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| || |||||||| ||||||||||| || || ||||| || || ||||| ||| Sbjct 1372139 TCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCT 1372080 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGT 82777 |||||||| || || || || ||||| || ||| || | || || || | ||| || || Sbjct 1372079 TGAATCTTGGCCTTCACGTTGTCAATAGTGTCA-GAGCTCTCGACCTCGAGAGTAATGGT 1372021 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || | ||||| ||||| |||||||| Sbjct 1372020 CTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 138 bits (152), Expect = 2e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || || || || || || ||||| ||||||| ||| |||| || || Sbjct 1371971 AGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTGCCATCC 1371912 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || ||||| || ||||||||||| || || || ||||| || || ||||| |||||||| Sbjct 1371911 TCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCCTTATCC 1371852 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGT 82777 |||||||| || || ||||| || || || || || | || || || | ||| || || Sbjct 1371851 TGAATCTTGGCCTTCACATTATCGATAGTGTC-CGAGCTCTCGACCTCAAGAGTAATGGT 1371793 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || | ||||| ||||| |||||||| Sbjct 1371792 CTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 Score = 123 bits (136), Expect = 5e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || || || || || || || ||||| ||||| || || | || | | ||| Sbjct 1372885 CGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCA 1372826 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| | || || ||||| || || || || ||||| Sbjct 1372825 TCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTG 1372766 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| ||||| | || ||||| ||||| ||||| ||| ||||| | ||| || Sbjct 1372765 TCTTGGATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATG 1372706 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| |||| ||||| ||||| ||||||||| Sbjct 1372705 GTCTTGCCGGTCAGGGTCTTAACAAAAATCTGCATT 1372670 Score = 120 bits (132), Expect = 6e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || || || || || || || ||||| ||||| || || | || | | || || || Sbjct 1372651 ACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCATCCTCA 1372592 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || ||||| |||||||| || || || || || || || || ||||| |||||||||||| Sbjct 1372591 AGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTATCTTGA 1372532 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGTCTT 82780 || || || || || || ||||| ||||| || | || || ||||| || || ||||| Sbjct 1372531 ATTTTGGCCTTCACGTTATCAATTGTATC-CGAGCTCTCAACCTCCAAGGTAATGGTCTT 1372473 Query 82781 GCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| ||||| || || ||||| || ||||| Sbjct 1372472 GCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 >seq461 Length=5900637 Score = 141 bits (156), Expect = 2e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | ||| || || || || ||||| || |||||||||| || | | || ||| Sbjct 2468935 AGGACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCAAGTGTACGTCCATCT 2468876 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||| ||||||||||| || | ||| || || || || || || |||||||| || Sbjct 2468875 TCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 2468816 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGT 82777 || |||||||| |||||||| || || || ||| || | ||||| || | ||| || || Sbjct 2468815 TGGATCTTTGCCTTTACATTGTCGATGGTGTCA-GAGCTCTCTACCTCGAGAGTGATGGT 2468757 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 ||| || ||||| ||||| ||||| |||||||| ||| Sbjct 2468756 CTTTCCAGTCAAGGTCTTAACAAAGATCTGCATGATT 2468720 Score = 122 bits (134), Expect = 2e-22 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || || || || || ||||| ||||| ||||||| || | || || Sbjct 2470306 CGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCA 2470247 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || || || || ||||| || || || ||||| Sbjct 2470246 TCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTG 2470187 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || ||||| || || || ||||| ||||| ||||| || | || || || | || || Sbjct 2470186 TCCTGAATTTTCGCCTTGACATTGTCAATGGTATC-GGAGCTCTCCACCTCAAGGGTAAT 2470128 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| ||||| |||||||| Sbjct 2470127 GGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCAT 2470092 Score = 120 bits (132), Expect = 6e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || ||||| || || || || || ||||| | ||| | | ||| || Sbjct 2469391 AGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCAAGAGTGCGACCATCC 2469332 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | || || ||||||||||| || ||||| ||||| ||||| || |||||||| || Sbjct 2469331 TCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGGATCCCTTCCTTGTCC 2469272 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGT 82777 || ||||| || |||||||| ||||| ||||| | || | || || || | || || || Sbjct 2469271 TGGATCTTGGCCTTTACATTGTCAATAGTATC-TGAGCTCTCGACCTCAAGGGTGATTGT 2469213 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || | || || || || || ||||| Sbjct 2469212 CTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 Score = 111 bits (122), Expect = 3e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || | ||| || || || || || || || ||||| |||| ||| | | || || Sbjct 2469163 AGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCC 2469104 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||| ||||||||||| |||| ||| || || || || || || |||||||| || Sbjct 2469103 TCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 2469044 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTATCGT 82777 || |||||||| |||||||| || || || ||| || | || || |||| || || || Sbjct 2469043 TGTATCTTTGCCTTTACATTGTCTATGGTGTCA-GAGCTCTCAACCTCCAGGGTGATGGT 2468985 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | || || ||||| |||||||| Sbjct 2468984 TTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 >seq1199 Length=7341449 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | |||||| | || ||||| || |||||||| ||||| ||||| | | Sbjct 1127641 CCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCT 1127700 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| || ||||| || || || || || ||||| || | |||||||||||| ||| Sbjct 1127701 AGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGT 1127760 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || || || || || || || || || ||||| || |||||||| || | || || Sbjct 1127761 ATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATC-GGAGCTCTCGAC 1127819 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | || ||||| || |||||||| Sbjct 1127820 CTCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCAT 1127867 >seq3426 Length=3004207 Score = 136 bits (150), Expect = 8e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | | |||||| | || ||||||||||| ||||| ||||| ||||||| | Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| || ||||| || ||||| || || ||||| || | ||| |||||||| || Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || || || || || ||||| || || ||||| |||| |||||| || | || || Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCA-GAGCTCTCGAC 2139042 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || ||||| || || | || || || || ||||||||| Sbjct 2139041 CTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATT 2138993 >seq3001 Length=2574463 Score = 120 bits (132), Expect = 6e-22 Identities = 115/146 (79%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 82573 TTTATCACC-TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATA 82631 || |||| | |||| |||||||| | || || | || || || ||||| ||||||||| Sbjct 511780 TTGATCATCATACCACCTCTCAACCTCATCACAAGATGAAGGGTGGATTCCTTCTGTATA 511721 Query 82632 TTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691 || ||||||| ||| ||| || || |||||||| || |||||||| || ||||||||| Sbjct 511720 TTGTAATCAGCAAGAGTTCGCCCATCATCTAGTTGCTTGCCAGCAAATATCAGTCTTTGT 511661 Query 82692 TGATCTGGAGGTATTCCTTCCTTATC 82717 || || ||||| ||||| |||||||| Sbjct 511660 TGGTCAGGAGGAATTCCCTCCTTATC 511635 >seq2419 Length=5026 Score = 120 bits (132), Expect = 6e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| ||||| || || || | ||| || || || || || || || || ||||| | Sbjct 4998 CCTCCCCTCAATCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCC 4939 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || || || |||||||||||||| | | || || || || || Sbjct 4938 AATGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGGGGGG 4879 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 ||||| ||||||||||| ||||| || || ||||| ||||| || || || | || || Sbjct 4878 ATTCCCTCCTTATCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCCG-AGCTCTCAAC 4820 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||||||||| | ||||| ||||| |||||||| Sbjct 4819 CTCAAGAGTAATAGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 4772 >seq3275 Length=3666727 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 82573 TTTATCACC-TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATA 82631 || |||| | |||| |||||||| | || || | | || || |||| ||||||||| Sbjct 2666496 TTGATCATCATACCACCTCTCAACCTCAACACAAGATAAAGGGTGCATTCCTTCTGTATA 2666555 Query 82632 TTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691 || ||||||| ||| ||| || || | |||||| || |||||||| || ||||| ||| Sbjct 2666556 TTGTAATCAGTAAGAGTTCACCCATCCTGTAGTTGCTTGCCAGCAAATATCAGTCTCTGT 2666615 Query 82692 TGATCTGGAGGTATTCCTTCCTTATC 82717 || || ||||| ||||| || ||||| Sbjct 2666616 TGGTCAGGAGGAATTCCCTCATTATC 2666641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981754917267894