Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq461 122 8e-23 seq21 109 5e-19 seq1199 102 8e-17 seq3426 98.7 1e-15 seq5571 89.7 5e-13 seq2419 86.0 6e-12 seq5 86.0 6e-12 >seq461 Length=5900637 Score = 122 bits (134), Expect = 8e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| ||||||||||| | | || | || || ||||| Sbjct 2470295 ATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCTTCAAGCTG 2470236 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | ||||||| ||||||||| || |||||||| |||||||| ||| || Sbjct 2470235 CTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC-TGAATTT 2470177 Query 133577 TTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || |||| | |||| || |||| | |||||| || | ||| | ||| || || | Sbjct 2470176 TCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCACCTCAAGGGTAATGGTCTTTCCAG 2470117 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | ||||| || || |||||||||||| Sbjct 2470116 TAAGAGTCTTAACAAAAATCTGCATG 2470091 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| || || || ||||| || | | || ||| | ||||| | Sbjct 2469841 AAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCA-TCCTCTAA 2469783 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | ||||||| ||| |||||||||||||| ||||||||||| ||| Sbjct 2469782 TTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCCTGGAT 2469723 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||||| | |||| || || | | ||| || || | ||| | ||| || || Sbjct 2469722 CTTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTCTTTCC 2469663 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || |||||||| Sbjct 2469662 AGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 105 bits (116), Expect = 6e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||||||| ||||| ||||||||||| ||| || ||||| | Sbjct 2470069 AAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCCAAT 2470010 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || |||| |||||||| |||||||||||||||||||| ||| Sbjct 2470009 TGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATC 2469950 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | || | ||||| | | ||| || || | |||| || || || Sbjct 2469949 TTTGACTTCACATTATCGATGGTGTCCGAGCTCTCAACCTCCAATGTGATCGTCTTACCA 2469890 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || ||||| ||||| Sbjct 2469889 GTCAGGGTCTTGACAAAAATTTGCAT 2469864 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| || || || |||||||| | | ||| ||| | ||||| | Sbjct 2469385 AAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCAAGAGTGCGACCA-TCCTCCAA 2469327 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | ||||||| ||||| ||||||||||| ||||||||||| ||| Sbjct 2469326 CTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGGATCCCTTCCTTGTCCTGGAT 2469267 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| || || | | ||| || || | ||||| || || || Sbjct 2469266 CTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACCTCAAGGGTGATTGTCTTCCC 2469207 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || ||||| ||||| || |||||| Sbjct 2469206 AGTTAGGGTTTTGACGAAGATTTGCATG 2469179 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 |||||||| ||||| || || ||||| | | ||| ||| || || | ||||| | Sbjct 2468920 GTGGACTCCTTCTGGATGTTATAATCAGCAA--GTGTACGTCCATCTTCCAATTGCTTTC 2468863 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| | | ||||||||| || ||||||||||||||||| ||||||| || Sbjct 2468862 CAGCAAAAATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCT 2468803 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | | ||| || |||| |||| ||| || || |||| | Sbjct 2468802 TTACATTGTCGATGGTGTCAGAGCTCTCTACCTCGAGAGTGATGGTCTTTCCAGTCAAGG 2468743 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 2468742 TCTTAACAAAGATCTGCATG 2468723 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | ||||| || || |||| | | ||||||||| || || |||||||||||| Sbjct 2469106 TCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 2469047 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | || | ||||| | | ||| || || | ||||| | Sbjct 2469046 TCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACCTCCAGGGTGATG 2468987 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || ||||| || || |||||||| Sbjct 2468986 GTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 >seq21 Length=3941259 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||||||| ||||| |||||||| || ||| || ||| | |||||||| Sbjct 1372876 AAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCA-TCCTCGAG 1372818 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || |||||| || || || || || |||||||| ||| Sbjct 1372817 CTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTGGAT 1372758 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| || || | | ||||| || | || | ||| ||||| Sbjct 1372757 CTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGTCTTGCC 1372698 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || || ||||||||||| Sbjct 1372697 GGTCAGGGTCTTAACAAAAATCTGCAT 1372671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAG 133513 ||||| | || ||||||||||| || ||||| ||| | | || ||| | |||||||| Sbjct 1372193 AAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCA-TCCTCGAG 1372135 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || |||| || | |||||||| ||||| || || |||||||| || Sbjct 1372134 TTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAAT 1372075 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| ||||| | | ||| || |||| || | ||| || || Sbjct 1372074 CTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTCCC 1372015 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || |||||||| Sbjct 1372014 AGTGAGGGTCTTGACAAAGATCTGCAT 1371988 >seq1199 Length=7341449 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| ||||||||||| | | || | | | || ||||||||||| || Sbjct 1127671 GTCGACTCTTTCTGGATATTGTAATCCGCTAGGGTTCGGCCA-TCTTCGAGCTGCTTACC 1127729 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || || || || || || ||||| || ||||| ||| || ||| Sbjct 1127730 TGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCCCTCTTTGTCCTGGATTTTGGCCTT 1127789 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||| |||| | ||| || || | || | ||| ||||| || || || Sbjct 1127790 GACATTGTCGATCGTATCGGAGCTCTCGACCTCAAGAGTAATGGTCTTGCCAGTTAGGGT 1127849 Query 133643 TTTTACGAAAATCTGCAT 133660 ||||||||| |||||||| Sbjct 1127850 TTTTACGAAGATCTGCAT 1127867 >seq3426 Length=3004207 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATC-GCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 || || || ||||| ||||||||||| || | | | | | || || ||||| ||||| Sbjct 2139190 GTAGATTCCTTCTGGATATTGTAATCAGCTAGTGTTCGGCCA-TCTTCAAGCTGTTTGCC 2139132 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| || ||||| || || |||||||| || ||||| |||||| ||| Sbjct 2139131 TGCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCCTGGATCTTGGCCTT 2139072 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| || || | | ||| || || | ||| | ||| || || || || || Sbjct 2139071 GACATTGTCAACTGTATCAGAGCTCTCGACCTCAAGGGTAATGGTCTTACCCGTTAGGGT 2139012 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 2139011 TTTCACGAAGATCTGCAT 2138994 >seq5571 Length=10537363 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | | || ||| | |||||||||||||| | Sbjct 10537249 GGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGACCA-TCCTCGAGCTGCTTCC 10537307 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 | || | ||||||| ||||||||||| ||||||||||||||||| Sbjct 10537308 CTGCAAAGATGAGCCTTTGCTGGTCGGGGGGGATGCCTTCCTTGTC 10537353 >seq2419 Length=5026 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| || || || ||||||||| ||| || | | | |||||||||||||| | Sbjct 4969 GGTCGACTCCTTTTGGATGTTGTAATCGGCCAATGTACGGCCA-TCCTCGAGCTGCTTTC 4911 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | ||||||||||| || ||||| || ||||| || |||||| || Sbjct 4910 CAGCAAAGATCAAGCGCTGCTGGTCAGGGGGGATTCCCTCCTTATCTTGGATCTTAGCCT 4851 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| | | ||| || || | || | || ||||| || || | Sbjct 4850 TAACATTGTCAATGGTGTCCGAGCTCTCAACCTCAAGAGTAATAGTCTTGCCTGTAAGGG 4791 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 4790 TCTTAACAAAGATCTGCAT 4772 >seq5 Length=3793322 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/106 (80%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || |||||||| | | || ||| | |||||||||||||| | Sbjct 114 GGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGACCA-TCCTCGAGCTGCTTCC 56 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 | || | ||||||| ||||||||||| ||||||||||||||||| Sbjct 55 CTGCAAAGATGAGCCTTTGCTGGTCGGG-GGGATGCCTTCCTTGTC 11 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483386078301040