Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq922 113 1e-19 seq5085 98.7 2e-15 >seq922 Length=8123900 Score = 113 bits (124), Expect = 1e-19 Identities = 154/210 (73%), Gaps = 9/210 (4%) Strand=Plus/Plus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACA-AG 131859 || |||||||| ||||| | |||||||| ||| |||| || | | || | || || Sbjct 2993834 AAAAAAGCAGACTGGGCGCTAAAATGGAT-CAA-----TTCCTCTGAATCTTTTGCAGAG 2993887 Query 131860 AC-TTG-TAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 | ||| | |||||||| |||||||||||||| |||||||| ||| ||| ||| | || Sbjct 2993888 AGGTTGATTGCTTTTGCCTGTGTTGAAGGTATCTTCTTTTCTGGTAGTTTTTGTTCCATA 2993947 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 |||||||| || || | || || |||||||| | | || || ||| || |||| || Sbjct 2993948 TTTTGGCTAAAAAAAAGGGGTTTAATGCCTGGTTTAACCTTCTCTAATGAACTCATTTCA 2994007 Query 131978 AGAGATGAAGCATTGCATACTGAATTTGCT 132007 |||||||||| || || ||| |||||| Sbjct 2994008 AGAGATGAAGGTTTACACTGTGATTTTGCT 2994037 >seq5085 Length=15980527 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || || ||||| || |||| || || || || |||||||| |||| |||||| Sbjct 2291635 AGGCACTTGAACGATGGAGATTTTGTGCTCTTTAACAGGCAACCCAGCTTGCACAAAATG 2291694 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA--TGTAA 305423 || || |||| ||||| | ||||| | | | | ||| ||||| || || ||| Sbjct 2291695 TCCATTATGGGTCATAGAATCAAAATCATGCCATACTCGACTTTTCGCTTGAACCTGTCT 2291754 Query 305424 GTG-CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||| ||| | || |||||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 2291755 GTGACTT---CACCATATAATGCTGATTTCGATGGAGATGAAATGAATATGCATGTCCCT 2291811 Query 305483 CAATCA 305488 || ||| Sbjct 2291812 CAGTCA 2291817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186725426099906