Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq461 96.9 2e-15 >seq461 Length=5900637 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||| ||||| | ||||| ||| | || |||||||| Sbjct 2468926 TGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCAAGTGTACGTCCATCTTCCAATTGC 2468867 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| ||||||||||| | |||||| || | || | ||||| ||||| || || Sbjct 2468866 TTTCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTT- 2468808 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 || | |||| ||| | |||||| ||| || || || | ||||| || || || Sbjct 2468807 TGCCTTTACATTGTCGATGGTGTCAGAGCT---CTCTACCTCGAGAGTGATGGTCTTTCC 2468751 Query 33723 TGTTAACGTTTTTACAAAGATCTGCATAGTTGGT 33756 || || || || |||||||||||||| ||||| Sbjct 2468750 AGTCAAGGTCTTAACAAAGATCTGCATGATTGGT 2468717 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| ||||| ||||| || || | || || || | || |||||||| Sbjct 2469154 TGGAGTGTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGC 2469095 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||| |||||||| || | |||||| || | || | ||||| ||||| || || Sbjct 2469094 TTTCCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTT- 2469036 Query 33667 TGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACC 33722 || | |||| ||| | |||||| ||| || || || | ||||| ||||| || Sbjct 2469035 TGCCTTTACATTGTCTATGGTGTCAGAGCTC---TCAACCTCCAGGGTGATGGTTTTCCC 2468979 Query 33723 TGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| ||||||||||||||| Sbjct 2468978 AGTTAGGGTTTTAACAAAGATCTGCATA 2468951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328680981064320