Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq461 132 1e-25 seq21 118 3e-21 seq2419 102 2e-16 seq1199 102 2e-16 seq3426 96.9 8e-15 seq5 87.8 4e-12 >seq461 Length=5900637 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || || || || |||||||| ||||| || || || || ||||| | Sbjct 2469872 TTTTGTCAAGACCCTGACTGGTAAGACGATCACATTGGAGGTTGAGAGCTCGGACACCAT 2469931 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||||||||| || || ||||| || || ||| ||||| || Sbjct 2469932 CGATAATGTGAAGTCAAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAGCAAAGGCT 2469991 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| ||||| ||||| ||||| |||||||||||| |||| |||||||| ||||||| Sbjct 2469992 GATCTTTGCCGGCAAGCAATTGGAGGATGGAAGGACTCTGGCTGATTACAATATCCAGAA 2470051 Query 206358 AGAGTCTACTCTTCA 206372 ||||| || || || Sbjct 2470052 GGAGTCCACCCTCCA 2470066 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || ||||| || |||||| | || || || || |||||| Sbjct 2468727 CAGATCTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTCGAGGTAGAGAGCTCTGAC 2468786 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| |||||| || || || ||||| || || ||| || Sbjct 2468787 ACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAG 2468846 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || |||||||| |||||||||||| | || | || ||||| ||| || Sbjct 2468847 AGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACACTTGCTGATTATAACATC 2468906 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 2468907 CAGAAGGAGTCCACACTCCACCTTGT 2468932 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || || || ||||| | || || || || || || || | || Sbjct 2469194 CAAAACCCTAACTGGGAAGACAATCACCCTTGAGGTCGAGAGCTCAGATACTATTGACAA 2469253 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||||| || || || ||||| || || || ||||| || ||||| Sbjct 2469254 TGTAAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGATCAGCAAAGGCTCATCTT 2469313 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||||||||| ||||| | ||| | || ||||||||| | || || ||||| Sbjct 2469314 TGCTGGGAAGCAGTTGGAGGATGGTCGCACTCTTGCAGATTACAACATTCAAAAGGAGTC 2469373 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| |||||| | || | || |||||| Sbjct 2469374 TACCCTTCACTTGGTGCTCAGGCTTCGA 2469401 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || ||||| ||||||||||| || || ||||| ||||| | || Sbjct 2469423 AAGACCCTCACTGGTAAAACCATCACTTTGGAGGTTGAGAGTTCAGACACTATTGATAAT 2469482 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| ||||| | || || Sbjct 2469483 GTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCTGACCAGCAAAGGTTGATTTTT 2469542 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| ||||||||||| | || | ||||| || || | ||||| ||||| Sbjct 2469543 GCCGGTAAGCAATTGGAAGATGGCCGTACCCTCGCCGACTATAATATTCAGAAGGAGTCC 2469602 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || | || ||||| Sbjct 2469603 ACACTCCATCTGGTGCTTAGGCTTCG 2469628 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 204770 TGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 204829 || || || ||||| ||||||| ||| || ||||||| |||||||||||| |||| ||| Sbjct 2470066 TGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCCAATTGC 2470007 Query 204830 TTTCCGGCGAAGATAAGCCGTTGTTG 204855 || ||||| ||||| |||| ||| || Sbjct 2470006 TTGCCGGCAAAGATCAGCCTTTGCTG 2469981 >seq21 Length=3941259 Score = 118 bits (130), Expect = 3e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || || ||| | || || || || |||||| Sbjct 1371991 CAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTCGAGGTCGAGAGCTCTGAC 1372050 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || || || ||| || ||| ||| Sbjct 1372051 ACTATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCAGCAA 1372110 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || || || || ||||| | || ||||| ||||| | ||||| |||||| || Sbjct 1372111 AGACTAATTTTTGCTGGTAAGCAACTCGAGGATGGTCGGACTCTTGCCGACTACAACATC 1372170 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||||||||| || | || | || ||||| Sbjct 1372171 CAGAAAGAGTCTACTCTCCATTTGGTGCTCAGGCTTCG 1372208 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| || | | |||| |||||||||||||||||||||| |||||||||||| | ||| Sbjct 1372435 CGAAGCCTGAGACCAAG-TGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTC 1372377 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || ||||| || || || || || |||| ||| || Sbjct 1372376 CTTCCATCCTCAAGCTGTTTACCAGCAAAAATTAGCCTTTGCTG 1372333 Score = 95.1 bits (104), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || || |||| || ||||| || || ||| | || || ||| Sbjct 1372240 ACTGGCAAGACCATTACCCTGGAGGTTGAAAGCTCAGATACAATTGACAACGTGAAGGCT 1372299 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || || || ||| || ||| ||||| || || || || || || Sbjct 1372300 AAAATTCAAGACAAGGAGGGTATTCCCCCTGACCAGCAAAGGCTAATTTTTGCTGGTAAA 1372359 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||||||||| | || || || || |||||||||||||||||||||| Sbjct 1372360 CAGCTTGAGGATGGAAGGACCCTTGCTGACTATAATATCCAGAAAGAGTCTACTCTTCA- 1372418 Query 206374 CTTGTTTTGAGACTTCG 206390 |||| | | || ||||| Sbjct 1372419 CTTGGTCTCAGGCTTCG 1372435 >seq2419 Length=5026 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || ||||| || || || ||| | || || || || || ||| Sbjct 4775 CAGATCTTTGTTAAGACCCTTACAGGCAAGACTATTACTCTTGAGGTTGAGAGCTCGGAC 4834 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| || || ||||| || ||| || Sbjct 4835 ACCATTGACAATGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCCCCTGACCAGCAG 4894 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||||||| | || ||||| | || ||||||||||||||| || Sbjct 4895 CGCTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACATTGGCCGATTACAACATC 4954 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||||| || ||||||||||| Sbjct 4955 CAAAAGGAGTCGACCCTTCACCTTGT 4980 >seq1199 Length=7341449 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || |||||||| ||| || |||||||| ||||||||||||| ||| || || || | || Sbjct 1127646 TCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCTAGGGT 1127705 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||| |||||||| || |||||||| || ||||||||| Sbjct 1127706 TCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGA 1127751 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || ||| | || || || || || || || |||| Sbjct 1127852 AAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGCTCCGATACGATCGACAAT 1127793 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || ||||| || || || || ||| | || |||||| Sbjct 1127792 GTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGATCAACAACGCCTCATCTTC 1127733 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | |||||||| | || | || |||||||| ||||||||||||| Sbjct 1127732 GCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTACAATATCCAGAAAGAGTCG 1127673 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| || ||| |||||||| || Sbjct 1127672 ACTCTTCATCTGGTTCTGAGACTTAGA 1127646 >seq3426 Length=3004207 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || || | || || || || ||||| ||||| || Sbjct 2139009 AAAACCCTAACGGGTAAGACCATTACCCTTGAGGTCGAGAGCTCTGATACAGTTGACAAT 2139068 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || ||||| || || || || ||| | || |||||| Sbjct 2139069 GTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGATCAGCAACGCCTCATCTTC 2139128 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| | |||||||| | || | || |||||||| ||||||| || ||| Sbjct 2139129 GCAGGCAAACAGCTTGAAGATGGCCGAACACTAGCTGATTACAATATCCAGAAGGAATCT 2139188 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 |||||||| || ||| ||||||| Sbjct 2139189 ACTCTTCATCTGGTTCTGAGACT 2139211 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 ||||||| ||| || ||||||||||| || ||||||| ||| || ||||| | || | Sbjct 2139211 AGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCTAGTGTTCGG 2139152 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||| ||||| || || |||||||| || ||||| ||| Sbjct 2139151 CCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGA 2139110 >seq5 Length=3793322 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| | | || ||| ||||| || ||||| || || ||| Sbjct 2 AAGATTCAAGACAAGGAAGGCA-TCCCCCCGACCAGCAAAGGCTCATCTTTGCAGGGAAG 60 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||| | || | || ||||||||| ||||||| |||||||| || ||| Sbjct 61 CAGCTCGAGGATGGTCGTACCCTTGCGGATTACAACATCCAGAAGGAGTCTACCCTCCAC 120 Query 206374 CTTGT 206378 ||||| Sbjct 121 CTTGT 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181733793614066