Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1199 96.9 3e-15 seq3001 87.8 2e-12 seq3426 84.2 2e-11 >seq1199 Length=7341449 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | || |||||||| |||| || || | || || | || ||||| | Sbjct 1127870 AAGATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGC 1127811 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 |||||| ||||| | || || ||||| || |||||||| ||||| || ||| Sbjct 1127810 TCCGATACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGAT 1127751 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG-ATTA 25350 || ||| | ||||| | || || || || |||||||||| ||| | |||| |||| Sbjct 1127750 CAACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCT-AGCGGATTA 1127692 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 |||||| || ||||| || || ||||| | || | ||| | ||||||||| Sbjct 1127691 CAATATCCAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGAGGAGGA 1127640 >seq3001 Length=2574463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 ||||| ||||| || || || || || |||||||| || | | ||||| ||||| || Sbjct 511635 GATAAGGAGGGAATTCCTCCTGACCAACAAAGACTGATATTTGCTGGCAAGCAACTAGAT 511694 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| ||| | | ||||||||||| || || ||||||||| ||||| | ||| | Sbjct 511695 GATGGGCGAACTCTTGCTGATTACAATATACAGAAGGAATCCACCCTTCATCTTGTGATG 511754 Query 25388 AGATTGAGAGGAGG-AAAATGATCA 25411 || |||||||| || | ||||||| Sbjct 511755 AGGTTGAGAGGTGGTATGATGATCA 511779 >seq3426 Length=3004207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || |||||||| || || || ||||||||| | ||||| | || |||||||| || ||| Sbjct 2139087 GACAAAGAGGGCATCCCACCAGATCAGCAACGCCTCATCTTCGCAGGCAAACAGCTTGAA 2139146 Query 25328 GATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||| ||| | ||| ||||||||||| || || ||||| || ||||| | || | Sbjct 2139147 GATGGCCGAACACT-AGCTGATTACAATATCCAGAAGGAATCTACTCTTCATCTGGTTCT 2139205 Query 25387 AAGATTGAGAGGAGG 25401 ||| | |||||||| Sbjct 2139206 GAGACTCAGAGGAGG 2139220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445062431094720