Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq922 127 3e-23 >seq922 Length=8123900 Score = 127 bits (140), Expect = 3e-23 Identities = 337/504 (67%), Gaps = 18/504 (4%) Strand=Plus/Plus Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| ||||| | |||| | |||||||| || ||||| || || |||||||| || Sbjct 2993489 ATTTGGGAGATGTATAAGAAAG-CAGAGGCCTCTTTCTGGACTGCTGAAGAGGTCGATCT 2993547 Query 1455836 CGGCGCCGACACGGTC--CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAG 1455893 | | | || || ||||||| || || | | || || ||||| | Sbjct 2993548 CTCT--CAAGACCTTCAGCACTGGGATTCTCTCACTTCTGGGGAAAAACACTTCATAACC 2993605 Query 1455894 CACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCG 1455953 || ||||| || || ||| || || ||||| || || || ||||| || || || Sbjct 2993606 CATGTCCTTGCTTTCTTT-GCAGCTTCTGATGGTATAGTCCTTGAAAACCTTGCGGGTCG 2993664 Query 1455954 CTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCAT 1456013 || ||||| ||||| ||| | ||||||| | || || || |||||||||||||| Sbjct 2993665 ATTCATGAAGGAGGTTCAAGTTGCAGAGGCTAGGGCTTTCTATGGCTTCCAGATCGCCAT 2993724 Query 1456014 CGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA-CCCGG 1456072 ||||||||||||||||| | ||| ||| || | || | ||| ||||||| || | Sbjct 2993725 TGAAAACATCCACTCTGAGATGTACAGCCTCTTGCTTGAATCTTACATCAAGGATTCCAG 2993784 Query 1456073 TCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCG 1456132 | |||||| | | || | || | || ||||| || | || ||||| || | Sbjct 2993785 T-GAGAAGAGTCGATTGTTCAGGGCTGTTGAAACGGTTCCCTGTGTTGCCAAAAAAGCAG 2993843 Query 1456133 ACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-GACAC-TTTGCCGAGCGGCTCGTC 1456190 |||||||| | || |||||||| |||| || | ||||| ||| || | | Sbjct 2993844 ACTGGGCGCTAAAATGGATCAA-------TTCCTCTGAATCTTTTGCAGAGAGGTTGATT 2993896 Query 1456191 GGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | |||||| | || || || ||||| || || || ||||| || |||| |||||||| Sbjct 2993897 GCTTTTGCCTGTGTTGAAGGTATCTTCTTTTCTGGTAGTTTTTGTTCCATATTTTGGCTA 2993956 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGT 1456273 || || | || | ||||| ||| Sbjct 2993957 AAAAAAAGGGGTTTAATGCCTGGT 2993980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177256987738852