Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq21 105 6e-18 seq2419 100 3e-16 seq461 91.5 1e-13 >seq21 Length=3941259 Score = 105 bits (116), Expect = 6e-18 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || |||||| || || ||||| || |||| ||| || | || || Sbjct 1372880 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCATCCTC 1372821 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| ||||| ||||||| |||||| || | |||| | ||||||||| Sbjct 1372820 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTG 1372761 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGT 35703 |||||| ||||| | | | | || || ||| |||||| || | || || || Sbjct 1372760 GATCTTCGTCTTCACATTGTCAATGGTATCCGAGCT---TTCCACTTCAAGAGTAATGGT 1372704 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || |||| || || ||||| |||||||||| Sbjct 1372703 CTTGCCGGTCAGGGTCTTAACAAAAATCTGCATTC 1372669 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | ||||||||||||||| | || |||||| || || ||||| |||| Sbjct 1372671 TTCCTCCACGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGG 1372612 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||| || | || || ||||| || || ||||| || | || ||||||||| | | Sbjct 1372611 CAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCG 1372552 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTC---GCTCGAT 35683 | | | |||||| | | ||| ||| | ||||| | | | || || |||| Sbjct 1372551 GGATTCCCTCCTTAT-CTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTC--- 1372496 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||||| || || || || || ||||| ||||| ||||| || ||||| Sbjct 1372495 TCAACCTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 >seq2419 Length=5026 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| ||||||||||||||||| || || | || || |||||||| || ||||| Sbjct 4963 CTCCTTTTGGATGTTGTAATCGGCCAATGTACGGCCATCCTCGAGCTGCTTTCCAGCAAA 4904 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | | |||||| || |||||| ||| | | | Sbjct 4903 GATCAAGCGCTGCTGGTCAGGGGGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACATT 4844 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||| | || || || || || || | || || Sbjct 4843 GTCAATGGTGTCCGAGCTC---TCAACCTCAAGAGTAATAGTCTTGCCTGTAAGGGTCTT 4787 Query 35722 CACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 4786 AACAAAGATCTGCAT 4772 >seq461 Length=5900637 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | ||| | ||||| || | || |||||||||||||||||| || || Sbjct 2469862 CCCCCACGAAGCCTGAGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCG 2469803 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || | |||||||| || || || | || ||| ||||| | ||| Sbjct 2469802 AGAGTACGACCATCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGG 2469743 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | ||||||||| ||||||| ||| | | | | | || || |||| || Sbjct 2469742 ATCCCTTCCTTGTCCTGGATCTTTGCCTTGACATTATCAATGGTATCCGAGCTC---TCA 2469686 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| || || || || || |||| ||||| ||||| |||||||| Sbjct 2469685 ACCTCCAGGGTAATGGTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || | ||| | |||||| || | ||| ||||||||||||||||||||| || Sbjct 2469406 CCGCCTCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCA 2469347 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||| || ||||| || | || ||||| || | ||| Sbjct 2469346 AGAGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGG 2469287 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | ||||||||| |||||| ||| | | | | | || || |||| || Sbjct 2469286 ATCCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTC---TCG 2469230 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | ||||| || || || ||||| Sbjct 2469229 ACCTCAAGGGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450761221749680