Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq21 125 7e-24 seq3426 122 9e-23 seq1199 111 2e-19 seq461 95.1 1e-14 >seq21 Length=3941259 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | ||| | |||||| | || || ||||| ||||| || || ||||||||| Sbjct 1372671 TTCCTCCACGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGG 1372612 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| | || || ||||||||||| |||||||| | | |||||| || |||| Sbjct 1372611 CAAGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCG 1372552 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || ||||||||||| || || || | ||| || || || | Sbjct 1372551 GGATTCCCTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAA 1372492 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | |||||||| || || || || ||||| || ||||||||||| Sbjct 1372491 CCTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||| ||||| || || |||||||| | | ||| || || |||||||| Sbjct 1372873 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCATCCTCGAGCTGC 1372814 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| | ||||||||| || || || || || || ||||| || || Sbjct 1372813 TTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTGGATCTTC 1372754 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | || || || |||||| || ||||||||||| || ||||| Sbjct 1372753 GTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGTCTTGCCGGTC 1372694 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| ||||| |||||| Sbjct 1372693 AGGGTCTTAACAAAAATCTGCATT 1372670 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || || || || || || ||||| ||| ||| || || ||||| Sbjct 1372419 GTGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCAAGCTG 1372360 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || |||||||| | | ||||| || || || || || || || ||||||||||| Sbjct 1372359 TTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATTTT 1372300 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || ||| | ||| || || ||| || || || |||||||| || || || Sbjct 1372299 AGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTTGCCAGT 1372240 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||||||||| Sbjct 1372239 CAAGGTCTTGACGAAAATTTGCAT 1372216 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || || || || |||||||||||| ||| || || || ||||| || Sbjct 1372190 TGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGACCATCCTCGAGTTGC 1372131 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| | | ||||| || || || || || || || |||||||| || Sbjct 1372130 TTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCCTTGTCTTGAATCTTG 1372071 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || ||| | ||||| || || || |||||||||||||| || || || Sbjct 1372070 GCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTAATGGTCTTCCCAGTG 1372011 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || || || || || ||||| Sbjct 1372010 AGGGTCTTGACAAAGATCTGCAT 1371988 >seq3426 Length=3004207 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||||||||| || || || || || || |||||||| || || ||||| || | Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || |||||||||||||| || || | || |||||||| || || Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || || || ||||| ||| | ||| || || || || Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACC 2139041 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || |||||||| ||||| |||| ||||| ||||| || |||||||| Sbjct 2139040 TCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2138991 >seq1199 Length=7341449 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||||||||| |||| || || || || || || || || || || || ||||| || | Sbjct 1127640 TCCTCCTCTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGC 1127699 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | ||| | || |||||||| || ||||| || || | || || ||||| || || Sbjct 1127700 TAGGGTTCGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGG 1127759 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 |||||| ||||| || || ||||| ||||| ||| | || ||||| || || Sbjct 1127760 TATGCCCTCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGAC 1127819 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || ||||||||||| || || |||| ||||| ||||| || ||||| || Sbjct 1127820 CTCAAGAGTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATCTT 1127870 >seq461 Length=5900637 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| | | || ||||| || ||||| ||||| || ||||| || || || Sbjct 2468950 CCACCCCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCA 2468891 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | || || || ||||||||||| | |||||| || || || Sbjct 2468890 AGTGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGG 2468831 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || ||| || || ||| | ||||| || || || Sbjct 2468830 ATGCCTTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGATGGTGTCAGAGCTCTCTACC 2468771 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || || || || || ||||| || || ||||| Sbjct 2468770 TCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 2468724 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| || || || ||||||||||||||||| || ||| ||| || || || Sbjct 2469389 CACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCAAGAGTGCGACCATCCTC 2469330 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | ||| || || ||||| || | | ||||||||||| || || ||||| || || || Sbjct 2469329 CAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGGATCCCTTCCTTGTCCTG 2469270 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || || || ||| | || || || || || || || || || || || Sbjct 2469269 GATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACCTCAAGGGTGATTGTCTT 2469210 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || |||| ||||| ||||| |||||||| Sbjct 2469209 CCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505362099759920