Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq922 190 3e-43 seq1199 107 3e-18 seq5085 104 3e-17 seq557 89.7 7e-13 >seq922 Length=8123900 Score = 190 bits (210), Expect = 3e-43 Identities = 413/615 (67%), Gaps = 6/615 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || || ||||| |||| || |||||||| ||| | ||| ||||| || || | Sbjct 2994040 GCAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAA 2993981 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||||| ||| | ||||| ||||||||||||| | |||| ||||||||||| Sbjct 2993980 ACCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAA 2993921 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTAT 39795 ||| ||||| || ||||| |||| | |||||| | || | | || || Sbjct 2993920 GATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATTGAT 2993861 Query 39796 CCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||| || | ||||| || ||||| || ||||| || | ||||| | ||| | || Sbjct 2993860 CCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAA 2993801 Query 39856 GAGATAATGTTTTTCATCACT---ATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 | | | ||| ||||| ||| || | || | || | || || || ||||| Sbjct 2993800 CAATCGAC--TCTTC-TCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACAT 2993744 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || |||||||||||||| || ||||| || || || ||| || || || | || Sbjct 2993743 CTCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAAC 2993684 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||| ||||| |||| |||| | |||||| ||||| |||||| ||| || Sbjct 2993683 TTGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGC 2993624 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTC 40092 ||| || || | ||||| | || || | |||||| | | || | || ||||| Sbjct 2993623 AAAGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTG 2993564 Query 40093 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTT 40152 | | |||| || | ||| || |||||||| ||||| || || |||||||| || || Sbjct 2993563 CTGAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTT 2993504 Query 40153 GTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTT 40212 ||||| | ||| || | |||||| ||| ||||| || ||||| || || || Sbjct 2993503 ATACATCTCCCAAATTTGGGGATATTTTATGGGAAACATGCAAAATCGATCAGGGTTCGA 2993444 Query 40213 TGCAAGGATGGGTTC 40227 ||||| | |||||| Sbjct 2993443 AGCAAGAAGGGGTTC 2993429 >seq1199 Length=7341449 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||||| ||| | |||| ||||| |||| || || Sbjct 5064282 TCCCCCTTGATCGACATAACGAGCAGTGTCATTGAACACTCGTAGCATTGGAACTATCCC 5064341 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| ||| || || | | || ||||||||| | ||| Sbjct 5064342 ATTAGATGTGCCATTTGTACCACGAATGTAGCTACTAGTAGCTCGAATATTATGGACAGA 5064401 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || |||||||| ||| || | |||||| || | || |||||||| Sbjct 5064402 AACACCAATGCCTCCTGCTGATTTGCTAATAACAGCACACTCCTTGAGGGTATCATATAT 5064461 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 |||||| |||||||| ||| |||| | |||||| ||||| Sbjct 5064462 ACCCTCAATGCTATCTTCTTTCATACACACAAGAAAGCAGCT 5064503 >seq5085 Length=15980527 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | ||||| ||||| | ||| |||| | |||||| || || || ||| Sbjct 1681012 CCCCCTTGATCAACATATCTTGCAGTATCATTGAAGACACGCAGCATTGGGATTATGCCA 1681071 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || ||||||||| ||| |||||||||||| ||| | |||||| | ||| Sbjct 1681072 TTTGAGGCACCATTTGTACCACGTATATAACTTCCTGTTGATCTGATATTATGGACAGAA 1681131 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 || || || ||||| || ||| || | ||||| |||| ||| | |||||| Sbjct 1681132 AGGCCAATACCTCCAGCTGATTTGCTAATGACTGCACACTCCTTCAGTGTATTGTATATA 1681191 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || | ||| ||| ||||| | |||||| |||||| Sbjct 1681192 CCCTCAATACCATCCTCTTTCATGCACACAAGAAAGCAGCTA 1681233 >seq557 Length=6368207 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 || ||| || || || || ||||||||||| ||||||||||| || | ||| || | Sbjct 1405737 TATACAACAAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCG 1405796 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 | || || | ||||||||| | ||| |||||||| |||||||| |||||| ||||| Sbjct 1405797 AGAAGGTTAATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAATGGCA-CAAAA 1405851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686859462775440