Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq922 228 6e-55 >seq922 Length=8123900 Score = 228 bits (252), Expect = 6e-55 Identities = 585/875 (67%), Gaps = 23/875 (3%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 ||||||| || |||||| | || ||| | ||||| || |||||| |||| || || | Sbjct 2993466 TGTTTCCCATAAAATATCCCCAAATTTGGGAGATGTATAAGAAAGCAGAGGCCTCTTTCT 2993525 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACC 43824 |||| || ||||| || ||| | || ||||| | ||||| | ||||| | | | | Sbjct 2993526 GGACTGCTGAAGAGGTCGATCTCTCTCAAGACCTTCAGCAC-TGGGATT-CTCTCACTTC 2993583 Query 43825 ACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 |||||||| || ||| | || | || || ||||| || || || ||||| Sbjct 2993584 TGGGGAAAAACACTTCATAACCCATGTCCTTGCTTTCTTTGCAGCTTCTGATGGTATAGT 2993643 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 | |||||| | | |||| || | | || |||||| | |||| || | ||| Sbjct 2993644 CCTTGAAAACCTTGCGGGTCGATTCATGAAGGAGGTTCAAGTTGCAGAGGCTAGGGCTTT 2993703 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 ||||| || || || ||||| ||||| || || || || |||||||| || || | || Sbjct 2993704 CTATGGCTTCCAGATCGCCATTGAAAACATCCACTCTGAGATGTACAGCCTCTTGCTTGA 2993763 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 | |||||||| ||| |||||| ||||||||| | || | ||||| || || Sbjct 2993764 ATCTTACATCAAGGATTCCAGTGAGAAGAGTCGATTGTTCAGGGCTGTTGAAACGGTTCC 2993823 Query 44065 -TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 || | | | | |||||||||||||| || |||||||| ||||| ||| ||||||| Sbjct 2993824 CTGTGTTGCCAAA-AAAGCAGACTGGGCGCTAAAATGGATCAATTCCTCTGAATCTTTTG 2993882 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG- 44182 ||| | | | || ||||| ||| ||||| || |||||||| || | |||| | Sbjct 2993883 CAGAGAGGTTGATTGCTTTTGCCTGTGTTGAAGGTATCTTCTTTTCTGG-TAGTTTTTGT 2993941 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||||||| |||| ||| | ||||| |||||||| || || || || ||||| | Sbjct 2993942 TCCATATTTTGGCTAAAAAAAAGGGGTTTAATGCCTGGTTTAACCTTCTCTAATGAACTC 2994001 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGA 44302 || | |||||||| ||||| || |||||||||||| | | || |||| | Sbjct 2994002 ATTTCAAGAGATGAAGGTTTACACTGTGATTTTGCTTGCCTTCTCTATG---ATCTTCTA 2994058 Query 44303 GACGATAAG--CCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAG 44360 || | ||| || ||| ||| || | |||| || || | ||| |||||| Sbjct 2994059 AACCACAAGCTCCCTCAACAAAG--CGTTCAAAATATAGTAAGGGAATCTGTAGAGATAG 2994116 Query 44361 AACAAGAATTTATGACAACAGCATT-ACCTGTAAATTTAATAGGAATGAATGAACTTTTG 44419 | ||||||| | || || ||||| | || | |||||||| | | || Sbjct 2994117 AGAGAGAATTTGTTTGTGATGCCTTGCCCTGT-GCTCTAGTGGGAATGAACGGCAATCTG 2994175 Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTG---GAACTGGGTTGCGAT 44476 |||| ||| || || |||| | || ||| | || ||| | |||| || ||| Sbjct 2994176 ATGAGCCAGTACATCGAATTTGTGGCTGATAG---GCTGTTGAATGCTTTGGGGTGTGAT 2994232 Query 44477 AAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAA 44536 ||| |||| || |||||||| ||||||| |||||| ||||| || | || || Sbjct 2994233 AAAATCTATGGGGTTCAAAACCCATTTGATTGGATGGAACTCATTTCACTGCAGGGGAAG 2994292 Query 44537 ACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || || || ||||| || | ||||||||||| || Sbjct 2994293 ACTAATTTCTTTGAGAAGAGGGTTGGAGAATACCA 2994327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428166404730