Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq21 89.7 4e-13 seq1199 87.8 2e-12 >seq21 Length=3941259 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || ||| |||||||| | || || || || || |||||||||||| Sbjct 1372669 CCTCCACGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCA 1372610 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || || |||||||| || || |||| || | ||| || || ||||| Sbjct 1372609 AGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGG 1372550 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| || ||| |||| | | || | || || | | ||||| Sbjct 1372549 ATTCCCTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACC 1372490 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||| |||| ||||| ||||| |||||||| Sbjct 1372489 TCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || || || || ||||||||||| || | | || | || ||| Sbjct 1372879 ACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCATCCTCG 1372820 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || | || | | ||| ||||| || || | ||||| || || | Sbjct 1372819 AGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTGG 1372760 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | |||| | || | || || | | ||| ||||| ||||| || | ||| Sbjct 1372759 ATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGTCTTG 1372700 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || || ||||| || ||||| Sbjct 1372699 CCGGTCAGGGTCTTAACAAAAATCTGCAT 1372671 >seq1199 Length=7341449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||| ||| | || || ||||| || |||||||| || ||| ||| || | ||||| Sbjct 1127659 ACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCTAGGGTTCGGC-CATCTTC 1127717 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| ||||| ||| | ||||| || |||||||| || || | |||||||| || Sbjct 1127718 GAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCCCTCTTTGTCCTG 1127777 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| ||| || | | || | || || | | || || || ||||| || | || Sbjct 1127778 GATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACCTCAAGAGTAATGGTCTT 1127837 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || ||||| || ||||| ||||| Sbjct 1127838 GCCAGTTAGGGTTTTTACGAAGATCTGCAT 1127867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424904642109552