Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2758 111 2e-19 seq5456 95.1 2e-14 seq922 86.0 8e-12 seq1199 84.2 3e-11 >seq2758 Length=2366178 Score = 111 bits (122), Expect = 2e-19 Identities = 196/284 (69%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| || || || ||||| ||||| ||||| ||||| | || ||||| || || Sbjct 1358545 ATCAAACCGCCCTGGACGAAGCAGGGCAGAGTCAAGAATATCAGCACGGTTAGTTGCAGC 1358486 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 || || | || || || | || || |||||||| || || | | ||||| | Sbjct 1358485 TATCACAATGATACCCGTGTTGCCTTCGAAACCATCCATTTCAGTCAAGAGCTGATTGAG 1358426 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACC 11629 |||||| || ||||||||||| | | | | | || || | | |||| | || || Sbjct 1358425 TGTTTGCTCCCTCTCATCATTCCCA--CCTCCAATTCCCGCCCCCCTTTGCCTACCAACT 1358368 Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 |||||||||||||||| || || || || || |||||| || | | ||||| Sbjct 1358367 GCATCAATCTCATCAACAAACACGATGCAAGGAGCATTTTCCTTTGCTTTCTTGAAGAGG 1358308 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || || ||||| ||||||||||| ||||||||||| ||||| Sbjct 1358307 TCACGGACCCTAGAAGCACCCACACCCACAAACATCTCAACAAA 1358264 >seq5456 Length=9150321 Score = 95.1 bits (104), Expect = 2e-14 Identities = 241/364 (66%), Gaps = 6/364 (2%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| | || || | |||||| || | ||| ||| ||| | || || || ||| Sbjct 7980802 TCAAACCTTCCTGGTCTAAGGAGAGCTTGATCCGAGATCTCCGGCCTGTTGGTTGCAGCA 7980743 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | | ||||| | || || ||||||||||| || || |||||||| | Sbjct 7980742 ATAACAATCACTCCAGTGTTTCCATCGAACCCATCCATCTCTGTAAGCAATTGATTCAAA 7980683 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACCG 11630 || | ||||||||||||||| || | | | | |||| || | || | || ||| Sbjct 7980682 GTCTATTCTCTCTCATCATTCCCT--CCTCCAATTCCAGTACCCCTCTGTCTCCCTACCA 7980625 Query 11631 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 11690 |||| |||||||||||||| || | || ||| |||| | || | | ||||||| Sbjct 7980624 CATCTATCTCATCAATGAACACCAAGCAAGGTGCATTTGCCTTTGCCTTGTTGAAGAGAT 7980565 Query 11691 CGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT 11750 | | ||||| || || || |||||||||||||| | || | | |||| Sbjct 7980564 CTCTCACCCTAGGAGCTCCAACTCCAACAAACATCTCTATGAATTCAGATCTAGAG--AG 7980507 Query 11751 GGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTAC 11810 || ||||| || | ||| || || ||||| || | ||||||||||| |||| Sbjct 7980506 AGAGAAATGGCACCCCAGCTTCTCCAGCTATGGCCTTAGCCAAAAGGGTCTTTCCAGTAC 7980447 Query 11811 CTGG 11814 |||| Sbjct 7980446 CTGG 7980443 >seq922 Length=8123900 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| ||||||| ||||| |||||||| |||||| || ||| Sbjct 2994036 GCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAACCA 2993977 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||||| || || | |||| | || | || || || || ||||||||| Sbjct 2993976 GGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAGATA 2993917 Query 122779 CCCTCCACACACGCAAACGCAA 122800 || || ||||| ||||| |||| Sbjct 2993916 CCTTCAACACAGGCAAAAGCAA 2993895 >seq1199 Length=7341449 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 111950 GGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTG 112009 ||||| |||| |||||| | |||||| | || ||| ||||| || ||| |||||| Sbjct 5064663 GGTGTCCCAGAATTGAACAAGGTTGGAGAAGCATGAGTGAACCAACGTTGAGACATCAAA 5064722 Query 112010 TCGTATGTCTCCAAGA-CAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 | |||||| | ||| ||||||||||||||||| ||| ||||| | || || | ||| Sbjct 5064723 TGATATGTC-CTTAGAGCAGAATCAATGTCTTCCTTGTGAATGCCAACAGCTACTCTCAT 5064781 Query 112069 GAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTT-GAAGAT-AGCTCTTC 112126 ||||| | || || | || | | | || | || | || |||||| || || | Sbjct 5064782 CAACATATGTTGAGGCCTCTCAACAACCTTTCC-TTGAACTTTTAGAAGATAAGATC-GC 5064839 Query 112127 TCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || || ||||||| ||||| ||| || | ||| ||||||| Sbjct 5064840 TCGAGAGTTTTGAACCCAAAATAATCATAGTCAAAGTCCCG 5064880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627986891601600