Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2758 127 2e-24 seq1809 95.1 1e-14 seq1199 84.2 3e-11 >seq2758 Length=2366178 Score = 127 bits (140), Expect = 2e-24 Identities = 202/286 (71%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||||||||| || || ||||| |||||| | || || || || || Sbjct 1358545 ATCAAACCGCCCTGGACGAAGCAGGGCAGAGTCAAGAATATCAGCACGGTTAGTTGCAGC 1358486 Query 9586 GATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || |||| ||||| |||| | || | ||||||||||| || ||||| || || || Sbjct 1358485 TATCACAATGATACCCGTGTTGCCTT--CGAAACCATCCATTTCAGTCAAGAGCTGATTG 1358428 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | ||||| |||| ||||||||| | | | | | || || | | |||| | || | Sbjct 1358427 AGTGTTTGCTCCCTCTCATCATTCCC--ACCTCCAATTCCCGCCCCCCTTTGCCTACCAA 1358370 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 9761 | |||||||||||||||| || |||||||| || |||||| || | |||| Sbjct 1358369 CTGCATCAATCTCATCAACAAACACGATGCAAGGAGCATTTTCCTTTGCTTTCTTGAAGA 1358310 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 | || || || | || |||||||| ||||||||||| ||||| Sbjct 1358309 GGTCACGGACCCTAGAAGCACCCACACCCACAAACATCTCAACAAA 1358264 >seq1809 Length=9585472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 182/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATC 9765 |||||| |||||||| || | |||| |||| | || | ||| ||| ||| | | Sbjct 7171626 ATCAATTTCATCAATAAATATAATGCTAGGTTCACATTTCCTAGCCTCTTGAAATAATTT 7171567 Query 9766 CCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || ||| |||| || || |||||||||||||| |||||||| | || | ||| || Sbjct 7171566 CCT--CACTCTTGAAGCTCCAACACCAACAAACATTTCCACAAATTCTGAACCAGAA-AT 7171510 Query 9824 TGGATGAAGGGG-ACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || ||| || ||| |||||||| ||| | ||| || |||||||||||||| | Sbjct 7171509 TGATAGAAATGGCACACGCGATTCACCAGCAGTAGCTTTTGCAAGAAGAGTCTTACCAGC 7171450 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGTATC 9941 ||| || ||| | | ||||||||| |||||| || || || | |||| | ||| Sbjct 7171449 ACCAGGAGGTCCCACAAAAAGGGCACCTTTTGGAATTTTAGCCCCTATTTCCTCA-TATT 7171391 Query 9942 TCTCAGGTTGCTTAAGAAAAT 9962 ||| || | ||| ||||||| Sbjct 7171390 TCTTTGGATTCTTCAGAAAAT 7171370 Score = 89.7 bits (98), Expect = 6e-13 Identities = 185/267 (69%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 9706 ATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATC 9765 |||||| |||||||| || | |||| |||| | || | ||| ||| ||| | | Sbjct 7220838 ATCAATTTCATCAAT-AATATAATGCTAGGTTCACATTTCCTAGCTTCTTGAAATAATTT 7220780 Query 9766 CCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || ||| |||| || || |||||||||||||| |||||||| | || | ||| || Sbjct 7220779 CCT--CACTCTTGAAGCTCCAACACCAACAAACATTTCCACAAATTCTGAACCAGAA-AT 7220723 Query 9824 TGGATGAAGGGG-ACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || ||| || ||| | ||||||| ||| | ||| || |||||||||||||| | Sbjct 7220722 TGATAGAAATGGCACACCAAATTCACCAGCAGTAGCTTTTGCAAGAAGAGTCTTACCAGC 7220663 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGTATC 9941 ||| || || | || ||||||||| | |||| || || || | |||| | ||| Sbjct 7220662 ACCAGGAGGTCCAACAAGAAGGGCACCTTTTAGAATTTTAGCACCTATTTCCTCA-TATT 7220604 Query 9942 TCTCAGGTTGCTTAAGAAAATCCACAA 9968 ||| || | ||| | ||||| ||||| Sbjct 7220603 TCTTTGGATTCTTCAAAAAATGCACAA 7220577 Score = 87.8 bits (96), Expect = 2e-12 Identities = 185/269 (69%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 ||||||||||||||||| || | |||| ||| | || | ||| ||| ||| | | Sbjct 7036921 GCATCAATCTCATCAATAAATATAATGCTAGGTGCACATTGCCTAGCTTCTTGAAATAAA 7036862 Query 9764 TCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 || ||| |||| | || |||||||||||||| |||| ||| | || | ||| Sbjct 7036861 CTCCT--CACTCTTGAAGGTCCAACACCAACAAACATTTCCATAAAATCTGAACCAGAA- 7036805 Query 9822 ATTGGATGAAGGGG-ACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 |||| ||| || ||| |||||||| ||| | ||| || ||||||||||| || Sbjct 7036804 ATTGATAGAAATGGCACACCCGATTCACCAGCAGTAGCTTTTGCAAGAAGAGTCTTTCCA 7036745 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGTA 9939 || || || ||| | || ||||| ||| |||||| || || || | |||| | || Sbjct 7036744 GTGCCAGGAGGTCCCACAAGAAGGGCTCCTTTTGGAATTTTAGCACCTAATTCCTCA-TA 7036686 Query 9940 TCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 | ||| || | ||| ||||||| |||| Sbjct 7036685 TTTCTTTGGATTCTTCAGAAAATGGACAA 7036657 >seq1199 Length=7341449 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTC-AACGGC 104198 |||| |||| || ||||||||| ||||||| || ||| || || |||||| || | Sbjct 5064877 GACTTTGACTATGATTATTTTGGGTTCAAAACTCTCGAGC-GATCTTATCTTCTAAAAGT 5064819 Query 104199 TCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTC 104258 || | | ||| || | | || || | ||||| ||| | || || | || |||| Sbjct 5064818 TCAAGGAAAGGTTGTTG-AGAGGCCTCAACATATGTTGATGAGAGTAGCTGTTGGCATTC 5064760 Query 104259 ATGGGGAAGACATTGATTCTG-TCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 104317 | ||||||||||||||||| ||| | |||||| | |||||| ||| || |||| Sbjct 5064759 ACAAGGAAGACATTGATTCTGCTCTAAG-GACATATCATTTGATGTCTCAACGTTGGTTC 5064701 Query 104318 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 | ||| || | |||||| | |||||| |||| ||||| | |||||| Sbjct 5064700 ACTCATGCTTCTCCAACCTTGTTCAATTCTGGGACACCTCGTCCCCAA 5064653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583218907293040