Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq21 132 3e-26 seq461 127 1e-24 >seq21 Length=3941259 Score = 132 bits (146), Expect = 3e-26 Identities = 160/215 (74%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 ||||||||||||||| ||| |||||| || || || || || | ||| || || | || Sbjct 1372655 CAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCATC 1372596 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||||| ||||| || ||||| || | | ||| ||||| ||||| | ||||||||| || Sbjct 1372595 CTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTATC 1372536 Query 34614 TGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCG 34672 | ||| ||| | || ||| || |||||| || |||||| || |||| ||| || | Sbjct 1372535 T-TGAATTTTGGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAGGTAATGG 1372477 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || || || || ||||| |||||||| |||||| Sbjct 1372476 TCTTGCCAGTCAAGGTTTTGACAAAAATTTGCATG 1372442 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||||||||| ||| |||||| || || || || || | Sbjct 1372897 CCCCCACGAAGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCC 1372838 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || ||||| ||||| || || | ||| || || || || Sbjct 1372837 AGGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGA 1372778 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || || || || | ||| || || ||| ||||| Sbjct 1372777 ATCCCCTCCTTGTCTTGGATC-TTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCAC 1372719 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || || || ||||| | || || |||||||||||||| Sbjct 1372718 TTCAAGAGTAATGGTCTTGCCGGTCAGGGTCTTAACAAAAATCTGCAT 1372671 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || ||||| ||| || || || ||||| || | ||| || | | || ||| Sbjct 1372424 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCA 1372365 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || |||||||| ||||| |||| | || ||||| || || | |||||||||||| || Sbjct 1372364 AGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCT-TG 1372306 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| | || ||| | |||||| ||| ||| || || |||| ||| || || || Sbjct 1372305 AATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTT 1372246 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || ||||| |||||| Sbjct 1372245 GCCAGTCAAGGTCTTGACGAAAATTTGCATG 1372215 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| | | ||||||||||||||| ||| || || ||||| || || | Sbjct 1372215 GCCCCCACGAAGCCTGAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGC 1372156 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || ||||| ||||| ||||| |||| | || ||||| || || Sbjct 1372155 AAGAGTCCGACCATCCTCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGG 1372096 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| || | || ||| | ||| ||||| |||||| | Sbjct 1372095 AATACCCTCCTTGTCT-TGAATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGA 1372037 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || || || | || || ||||| |||||||| Sbjct 1372036 CCTCGAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 >seq461 Length=5900637 Score = 127 bits (140), Expect = 1e-24 Identities = 157/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||| |||||| ||| |||||| ||||| ||||| || | || || || | ||||| Sbjct 2469617 CACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCGAGGGTACGGCCATCTTC 2469558 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 | ||| ||||||||||| || || | || ||||| || || | |||||||||||| Sbjct 2469557 CAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 2469498 Query 34617 GATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||| || | ||||| || ||| |||||| ||||| || |||| || || |||| Sbjct 2469497 GATC-TTGGCCTTAACATTATCAATAGTGTCTGAACTCTCAACCTCCAAAGTGATGGTTT 2469439 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || | || ||||||||||| |||||| Sbjct 2469438 TACCAGTGAGGGTCTTCACAAAAATTTGCATG 2469407 Score = 102 bits (112), Expect = 5e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| ||||| ||| ||||||||||||||| || || | || || || | || || Sbjct 2469844 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCGAGAGTACGACCATCCTCT 2469785 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| ||||| || || || | | ||||||||| || || | || |||||||| | Sbjct 2469784 AATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGGGATCCCTTCCTTGTCCTGG 2469725 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| |||| || || || ||| || || |||||| || |||| ||| || || || Sbjct 2469724 ATC-TTTGCCTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAGGGTAATGGTCTT 2469666 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||||| ||||| |||||||| Sbjct 2469665 TCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| || ||||||||||| | |||||| || | ||||| | ||| Sbjct 2468926 TGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCAAGTGTACGTCCATCTTCCAATTGC 2468867 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || ||||| || || | ||| ||||| || || | || |||||||| ||||||| Sbjct 2468866 TTTCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTT 2468807 Query 34624 TGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTT 34683 |||| || ||||| |||||| || || | || || || || || || Sbjct 2468806 GCCTTTACATTGTCGATGGTGTCAGAGCTCTCTACCTCGAGAGTGATGGTCTTTCCAGTC 2468747 Query 34684 AACGTTTTCACAAAAATCTGCATG-TTGATTG 34714 || || || ||||| ||||||||| ||| ||| Sbjct 2468746 AAGGTCTTAACAAAGATCTGCATGATTGGTTG 2468715 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| || | ||| || ||| |||||| || || || ||||| | | Sbjct 2470318 CCACCACGAAGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCA 2470259 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | | |||||||| || || || ||||| || | | ||| ||||| || || Sbjct 2470258 AGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 2470199 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | || || | ||| || || ||||||||| Sbjct 2470198 ATGCCCTCCTTGTC-CTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCAC 2470140 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || || || | || || ||||||||||||||| Sbjct 2470139 CTCAAGGGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCATG 2470091 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||||| ||| | | |||||| || || || ||||||||||||||| ||||||| Sbjct 2469407 GCCGCCTCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGC 2469348 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || | || || || ||||| || | | || || || || || Sbjct 2469347 AAGAGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGG 2469288 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| |||| ||| || ||| |||||| || Sbjct 2469287 GATCCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGAC 2469228 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || || |||| ||||| || || || |||||| Sbjct 2469227 CTCAAGGGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCATG 2469179 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||| ||| |||||| || || || ||||| | || || | | || || Sbjct 2470072 ACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCC 2470013 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| || |||||||| || | | || ||||| || || | || |||||||| || Sbjct 2470012 AATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTGTC-CTG 2469954 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | |||| || || || || ||||| |||||| || |||| || ||||| || Sbjct 2469953 AATCTTTGACTTCACATTATCGATGGTGTCCGAGCTCTCAACCTCCAATGTGATCGTCTT 2469894 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || | || || |||||||| ||||| Sbjct 2469893 ACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314707559682818