Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1199 123 2e-23 seq21 116 3e-21 seq461 113 4e-20 seq2419 104 2e-17 >seq1199 Length=7341449 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| || || |||||| | ||||||||||| || || ||| Sbjct 1127867 ATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGCTCC 1127808 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | ||||| ||||| || |||||||| ||||||||||| |||||| Sbjct 1127807 GATACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGATCAA 1127748 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| || || || | ||||| | ||| | | |||||||| Sbjct 1127747 CAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTACAAT 1127688 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || || |||||||| | ||| ||||| || Sbjct 1127687 ATCCAGAAAGAGTCGACTCTTCATCTGGTTCTG 1127655 >seq21 Length=3941259 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||||||||||| | |||||||||||||||||| || Sbjct 1372671 ATGCAGATTTTTGTTAAGACCCTGACCGGCAAGACCATTACTCTTGAAGTGGAAAGCTCG 1372730 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || |||||||| || || || ||||| ||||| Sbjct 1372731 GATACCATTGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGGATTCCACCTGATCAG 1372790 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || || | || || || ||| | | || ||||| Sbjct 1372791 CAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCCTGGCGGACTACAAT 1372850 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||| ||| | |||||||| Sbjct 1372851 ATCCAGAAGGAGTCCACCCTCCATTTGGT 1372879 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | |||||||| || || || || Sbjct 1371988 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTCGAGGTCGAGAGCTCT 1372047 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||||||||| || || || || || || || Sbjct 1372048 GACACTATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCAG 1372107 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | |||| | || || || ||| | || || || ||| || |||| |||||| Sbjct 1372108 CAAAGACTAATTTTTGCTGGTAAGCAACTCGAGGATGGTCGGACTCTTGCCGACTACAAC 1372167 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || || ||||| || | |||||||| Sbjct 1372168 ATCCAGAAAGAGTCTACTCTCCATTTGGT 1372196 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| ||||| |||| |||||| | ||||| | || || || || Sbjct 1372442 CATGCAAATTTTTGTCAAAACCTTGACTGGCAAGACCATTACCTTGGAGGTTGAGAGCTC 1372501 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || || ||||||||||| || || || || || || || || Sbjct 1372502 GGATACAATTGATAACGTGAAGGCCAAAATTCAAGATAAGGAGGGAATCCCGCCTGACCA 1372561 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || |||||||| | || || | |||| || |||| ||||| Sbjct 1372562 GCAGAGGCTTATTTTTGCTGGCAAACAGCTTGAGGATGGCCGGACCCTTGCCGACTACAA 1372621 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 || || |||||||| || | |||||||| ||| Sbjct 1372622 TATCCAGAAGGAGTCCACACTCCATTTGGTGTTG 1372655 >seq461 Length=5900637 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| || ||| | ||||| || || || || || Sbjct 2469636 ATGCAGATCTTTGTTAAAACCCTGACTGGAAAGACCATTACCCTGGAGGTTGAGAGCTCG 2469695 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||| || || ||||| ||||| || || ||||| ||| Sbjct 2469696 GATACCATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAA 2469755 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || ||||| || || || || | | || |||||| Sbjct 2469756 CAGAGGCTCATCTTCGCTGGTAAGCAATTAGAGGATGGTCGTACTCTCGCGGACTACAAC 2469815 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 |||||||||||||| ||| | || |||||| Sbjct 2469816 ATTCAAAAGGAGTCCACCCTCCACTTGGTT 2469845 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| || || || ||| | || || ||||| || || || Sbjct 2469179 CATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACAATCACCCTTGAGGTCGAGAGCTC 2469238 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || || || || || ||||| ||||| || || |||||||| Sbjct 2469239 AGATACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGATCA 2469298 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | | || | || || || || ||||| || || || || | |||||||| Sbjct 2469299 GCAAAGGCTCATCTTTGCTGGGAAGCAGTTGGAGGATGGTCGCACTCTTGCAGATTACAA 2469358 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||||||||||||| ||| | || ||||| Sbjct 2469359 CATTCAAAAGGAGTCTACCCTTCACTTGGT 2469388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| || ||| | || ||||| || || || || Sbjct 2468723 CATGCAGATCTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTCGAGGTAGAGAGCTC 2468782 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || || ||| || || ||||| |||||||| || || || || Sbjct 2468783 TGACACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 2468842 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || || ||||||||||| | || || | ||||| || Sbjct 2468843 GCAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACACTTGCTGATTATAA 2468902 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || |||||||| || Sbjct 2468903 CATCCAGAAGGAGTCCAC 2468920 >seq2419 Length=5026 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| ||||||||||||| || || || Sbjct 4772 ATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACTATTACTCTTGAGGTTGAGAGCTCG 4831 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || ||||| || || || || || || || || Sbjct 4832 GACACCATTGACAATGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCCCCTGACCAG 4891 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || || | || || | || | ||||||||||| Sbjct 4892 CAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACATTGGCCGATTACAAC 4951 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||||||| | || | || | || ||| |||| ||||| Sbjct 4952 ATCCAAAAGGAGTCGACCCTTCACCTTGTCCTCCGATTGAGGGGAGGCAT 5001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434887161985920