Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq994 87.8 2e-12 >seq994 Length=7564463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 6612 CCAC-GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACC 6670 |||| ||| ||| | |||||| ||| | |||| || |||||||||||| ||||| Sbjct 1634782 CCACAGACGTGACCTATCATGCGCGTCAAGAGAGAATAGGAAGCAATGTTGAAGGGCACA 1634841 Query 6671 CCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACG 6730 || | |||||||| | || || ||||| | |||||| || ||||||||||| || || Sbjct 1634842 CCAAGACCCATGTCACAGGAACGCTGATACATCTGGCAAGATAGCTCCCCATTTGCTACA 1634901 Query 6731 TAGAATTGGCAGAGGGT 6747 ||||| | ||| ||||| Sbjct 1634902 TAGAACT-GCAAAGGGT 1634917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 34598 ACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCG 34657 ||||| ||| | ||||| || || ||||||||||| || |||||| | ||||| || || Sbjct 1634917 ACCCTTTGC-AGTTCTATGTAGCAAATGGGGAGCTATCTTGCCAGATGTATCAGCGTTCC 1634859 Query 34658 GGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATG 34717 | |||||||| | || ||||| |||||||||||| || |||| | ||| |||| Sbjct 1634858 TGTGACATGGGTCTTGGTGTGCCCTTCAACATTGCTTCCTATTCTCTCTTGACGCGCATG 1634799 Query 34718 ATCGCTCATGTC-GTGG 34733 || | ||| ||| |||| Sbjct 1634798 ATAGGTCACGTCTGTGG 1634782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448230203553120