Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3426 91.5 1e-13 seq21 91.5 1e-13 >seq3426 Length=3004207 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/234 (70%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | | | |||| ||| || || || || || ||||| ||||| || Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 |||||||| | || |||||||||||||| || || || || || ||||| || |||||| Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | || |||||||||| ||| || |||| | | || ||||| ||| ||| Sbjct 2139100 -ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCT---CTC 2139045 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || || | || || | || ||||| || ||||| || ||||| ||||| || Sbjct 2139044 GACCTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2138991 >seq21 Length=3941259 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||||||| || ||| ||| || || ||||| || |||||||| || || | || Sbjct 1372654 AACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCATCC 1372595 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC 39170 |||||||||||||| ||||| ||||| | ||||||||| Sbjct 1372594 TCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTC 1372557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429515519190098