Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq461 100 2e-16 seq1199 96.9 2e-15 seq3426 95.1 8e-15 seq2419 93.3 3e-14 seq21 86.0 4e-12 >seq461 Length=5900637 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||||||||| || || ||||| ||||| || || ||||| | | Sbjct 2468952 ATGCAGATCTTTGTTAAAACCCTAACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCT 2469011 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||| || ||||| ||||| | || || || || Sbjct 2469012 GACACCATAGACAATGTAAAGGCAAAGATACAGGACAAGGAAGGCATTCCCCCTGACCAG 2469071 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | ||||| ||||| || || ||| |||| || | || ||| | | || || ||| Sbjct 2469072 CAGAGATTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTGCTGACTATAAC 2469131 Query 23791 ATACAAAAAGAGTCCACA 23808 || ||||| ||||||||| Sbjct 2469132 ATCCAAAAGGAGTCCACA 2469149 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || ||||| || || || |||||||| | || ||||| | || Sbjct 2469864 ATGCAAATTTTTGTCAAGACCCTGACTGGTAAGACGATCACATTGGAGGTTGAGAGCTCG 2469923 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | || ||||| ||||| | || || || || Sbjct 2469924 GACACCATCGATAATGTGAAGTCAAAGA-TTCAGGACAAGGAAGGCATCCCTCCTGACCA 2469982 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||||||||| ||| |||| || | | | ||| | | |||||||| Sbjct 2469983 GCAAAGGCTGATCTTTGCCGGCAAGCAATTGGAGGATGGAAGGACTCTGGCTGATTACAA 2470042 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| | ||||| || | |||||| | || || Sbjct 2470043 TATCCAGAAGGAGTCCACCCTCCATTTGGTCCTCAGGTTGAGGGGTGG 2470090 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||| | || ||||| || ||||||||||| || || | | Sbjct 2468724 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTCGAGGTAGAGAGCTCT 2468783 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| ||| || ||||| ||||| | || || || || Sbjct 2468784 GACACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 2468843 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || || ||| ||||||| | ||| || | | ||||| ||| Sbjct 2468844 CAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACACTTGCTGATTATAAC 2468903 Query 23791 ATACAAAAAGAGTCCACA 23808 || || || ||||||||| Sbjct 2468904 ATCCAGAAGGAGTCCACA 2468921 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||||||||| || ||||| || || || || || ||||| | || Sbjct 2469636 ATGCAGATCTTTGTTAAAACCCTGACTGGAAAGACCATTACCCTGGAGGTTGAGAGCTCG 2469695 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | ||| || ||||| ||||| | || || || || Sbjct 2469696 GATACCATTGATAATGTCAAGGC-AAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCA 2469754 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || || || || || ||| | || || | || ||| | | || ||||| Sbjct 2469755 ACAGAGGCTCATCTTCGCTGGTAAGCAATTAGAGGATGGTCGTACTCTCGCGGACTACAA 2469814 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| |||||||| | || || ||| | ||| | || || || Sbjct 2469815 CATTCAAAAGGAGTCCACCCTCCACTTGGTTCTCAGGCTTCGTGGGGG 2469862 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||| || || || || ||||| || || || || | | Sbjct 2469180 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACAATCACCCTTGAGGTCGAGAGCTCA 2469239 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||| | |||| || || ||||| ||||| | || || ||||| Sbjct 2469240 GATACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGATCAG 2469299 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || || || |||| || | |||||| | | ||||||||| Sbjct 2469300 CAAAGGCTCATCTTTGCTGGGAAGCAGTTGGAGGATGGTCGCACTCTTGCAGATTACAAC 2469359 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| ||||| || | || || || | ||| | ||||| || Sbjct 2469360 ATTCAAAAGGAGTCTACCCTTCACTTGGTGCTCAGGCTTCGAGGCGG 2469406 >seq1199 Length=7341449 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || || || || ||||| || || || | Sbjct 1127870 AAGATGCAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGC 1127811 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | |||| | |||||||| || |||| ||||| Sbjct 1127810 TCCGATACGATCGACAATGTCAAGGCCAAAA-TCCAGGACAAAGAGGGCATACCACCAGA 1127752 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| || | || || || || || || || ||||| | || || ||| ||||| Sbjct 1127751 TCAACAACGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTA 1127692 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || |||||||| || | ||| | ||| | || | |||||||| Sbjct 1127691 CAATATCCAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGAGGAGGA 1127640 >seq3426 Length=3004207 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| |||||||| ||||| || || || || || || || || | Sbjct 2138991 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTTGAGGTCGAGAGC 2139050 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || ||||| ||| | || | || || |||||||| || | || ||||| Sbjct 2139051 TCTGATACAGTTGACAATGTCAAGGC-CAAGATCCAGGACAAAGAGGGCATCCCACCAGA 2139109 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || || | || || || |||||||| || ||||| | || || ||| ||||| Sbjct 2139110 TCAGCAACGCCTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGAACACTAGCTGATTA 2139169 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || || || || | ||| | ||| | || | ||||||| Sbjct 2139170 CAATATCCAGAAGGAATCTACTCTTCATCTGGTTCTGAGACTCAGAGGAGG 2139220 >seq2419 Length=5026 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||||| || || || || || ||||| || ||||| | || Sbjct 4772 ATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACTATTACTCTTGAGGTTGAGAGCTCG 4831 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| |||| | || | | || || || || | || || || || Sbjct 4832 GACACCATTGACAATGTTAAGGCTAAGA-TCCAAGATAAGGAGGGAATCCCCCCTGACCA 4890 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| || || || || || || | || || || | ||||||||| Sbjct 4891 GCAGCGCTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACATTGGCCGATTACAA 4950 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 4951 CATCCAAAAGGAGTCGAC 4968 >seq21 Length=3941259 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| ||||| ||||| || || || || || ||||| ||||| || | | Sbjct 1372670 AATGCAGATTTTTGTTAAGACCCTGACCGGCAAGACCATTACTCTTGAAGTGGAAAGCTC 1372729 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| || |||| ||| | || || || || ||||| || || | || || |||| Sbjct 1372730 GGATACCATTGACAATGTGAAGAC-GAAGATCCAAGACAAGGAGGGGATTCCACCTGATC 1372788 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || || || || || | || || | | || |||| Sbjct 1372789 AGCAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCCTGGCGGACTACA 1372848 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || || || |||||||| | ||||| || Sbjct 1372849 ATATCCAGAAGGAGTCCACCCTCCATTTGGT 1372879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337985929398968