Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq922 221 1e-52 seq557 102 7e-17 >seq922 Length=8123900 Score = 221 bits (244), Expect = 1e-52 Identities = 610/919 (66%), Gaps = 27/919 (3%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||||||||| || | ||| || ||||||||||| || || | | ||||| | Sbjct 2994330 TTTTGGTATTCTCCAACCCTCTTCTCAAAGAAATTAGTCTTCCCCTGCAGTGAAATGAGT 2994271 Query 4317 TCCATAAAATCAAACGGATTAGTTG--CGTTGTAATGTTTTTCACACTTTAGAGC-TACA 4373 ||||| ||||||| || || ||| | || ||| |||||| | ||| | || Sbjct 2994270 TCCATCCAATCAAATGGGTT--TTGAACCCCATAGATTTTATCACACCCCAAAGCATTCA 2994213 Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 | || | ||||| |||||||| || ||||||||||| || | || ||| ||||| | | Sbjct 2994212 A-CAGCCTATCAGCCACAAATTCGATGTACTGGCTCATCAGATTGCCGTTCATTCCCACT 2994154 Query 4434 AATCTCACAGGTAGCGCGTATGTCAAA--AACTCTTGTTCTATAGTTACGGCTTCTGTGA 4491 | |||||| | | || |||| || ||| ||||| ||| | ||| | | Sbjct 2994153 AGAG-CACAGGGCAAG-GCATCACAAACAAATTCTCTCTCTATCTCTACAGATTCCCTTA 2994096 Query 4492 TTATATCTTTTATTTTATCTTTAGATGGTTTAT--TTACTAAGTATCCAAACAATAAACA 4549 ||||| || | | | || || | || | || ||| ||| | | | | || Sbjct 2994095 CTATATTTTGAACGCTTTGTTGAGGGAGCTTGTGGTTTAGAAG-ATC-ATAGAGAAGGCA 2994038 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609 ||||||||||| || |||||||| ||||| ||| ||||| ||||| || ||||| || Sbjct 2994037 AGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAACC 2993978 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 ||||||||||| || ||||| ||||||||||| | ||| ||||||||||| || Sbjct 2993977 AGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAGAT 2993918 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAA----TCGGGACCCGAACGAGCTGGCTTTGTCTT 4725 ||||| || |||||| || | || || | | || || || ||| Sbjct 2993917 ACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAG-AGGAATTG---- 2993863 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 |||||||||| ||||||| |||||||| ||| || |||| || | | ||| Sbjct 2993862 --ATCCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCC 2993805 Query 4786 TAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACA 4845 | || ||| ||| || ||| | || | || |||| || | | ||||| |||| Sbjct 2993804 TGAACAATCGACTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACA 2993745 Query 4846 TTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTT 4904 | ||||| || || ||||| || || ||||| || || || ||||| ||||| |||| Sbjct 2993744 TCTCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGC-CCTAGCCTCTGCA 2993686 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 |||||||| || || |||| | | | |||||| |||||||| ||| ||| Sbjct 2993685 ACTTGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCT 2993626 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAG 5024 ||||| || || | ||||| | ||| |||| | ||| ||| | || | |||| Sbjct 2993625 GCAAAGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAG 2993566 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 || | | |||| || | ||| || |||||| ||||||| || || || || ||||| Sbjct 2993565 TGCTGAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTC 2993506 Query 5085 TTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTA 5144 || ||||| |||||| | ||||| | || |||| ||| ||||| | ||| Sbjct 2993505 TTATACATCTCCCAAATTTGGGGATATTTTATGGGAAACATGCAAAATCGATCAGGGTTC 2993446 Query 5145 GGTGTAAGAAGCGGTTCTT 5163 | | |||||| ||||||| Sbjct 2993445 GAAGCAAGAAGGGGTTCTT 2993427 >seq557 Length=6368207 Score = 102 bits (112), Expect = 7e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4540 ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAA 4599 |||| ||||| |||||||||||||| | ||| || ||||| || ||||| || || | Sbjct 1405740 ACAACAAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCATTCGAGA 1405799 Query 4600 ACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 | |||||||| ||||| ||||||| ||||||||||||||| || || Sbjct 1405800 AGGTTAATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAATGGC 1405845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427019693983418