Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq922 179 5e-40 seq1199 93.3 6e-14 seq5085 87.8 2e-12 >seq922 Length=8123900 Score = 179 bits (198), Expect = 5e-40 Identities = 373/554 (67%), Gaps = 6/554 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||||||||| || | |||||||||||| ||| | ||| ||||| || || | | Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||||| || | |||||| ||||||||||| | ||| ||||||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGT 48317 || ||||| || ||||| || | | |||||| | || | ||| | | Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAA---GATTCAGAGGAATTG 2993863 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| | | ||||| || || || || ||||| || | ||||| | ||| | Sbjct 2993862 ATCCATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTG 2993803 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || | | || ||| || ||| || | ||||| || | || || || ||||| Sbjct 2993802 AACAATCGACTCTTCTCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATC 2993743 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||| || |||||||| || ||||| || || || ||| || || |||| | Sbjct 2993742 TCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACT 2993683 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || |||||| | ||||| | || | || ||| ||||| |||||| ||| ||| Sbjct 2993682 TGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCA 2993623 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 || || || | ||||| | || || | |||||| ||||| || || ||||| Sbjct 2993622 AAGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGC 2993563 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 | | |||| || | ||| || |||||||| ||||| || || ||||||||||| ||| Sbjct 2993562 TGAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTA 2993503 Query 48678 TACATATTCCATAT 48691 ||||| | ||| || Sbjct 2993502 TACATCTCCCAAAT 2993489 >seq1199 Length=7341449 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||| | ||||||| ||| ||||| ||||||||| || |||||| |||| | | || Sbjct 5062658 CTCGCGTTCATATCTAGTGTATAGTTCTTCAAATTCCTCGCCCCAACAATCAGCTAGACC 5062717 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 | |||||| || || | ||| ||||| || |||| ||||| || | | ||||||| Sbjct 5062718 TGTAGCTTCATTGGGACAAAACAAGGACCATTCCCCATTTTCCTGGACCCTTCTCATAAA 5062777 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| || ||| ||| ||||| | | || | |||||| Sbjct 5062778 GAGATCAGGCACCCAAAGTGCATAAAAGAGATCCCTTGCCCTGTTTTCTTC 5062828 >seq5085 Length=15980527 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 77682 ATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTA 77741 |||||||| || ||||||||||| || ||| | | | ||||| || ||||| || Sbjct 1679607 ATAGATGCCAGGTTACAAACTGCAGTTTCTGTAGGGCTAGTATATTCAATAATCTCTGTG 1679666 Query 77742 CATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA 77797 || || ||| | ||||| || |||||||||||||||||||||||| ||||||| Sbjct 1679667 CAGAGGTTAGAGGACTTGATGGTTCCCAGATTTTGTTGGTTGCTCTTTCTATTGCA 1679722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694618905413440