Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq922 170 3e-37 seq1199 100 4e-16 seq5085 96.9 5e-15 >seq922 Length=8123900 Score = 170 bits (188), Expect = 3e-37 Identities = 393/589 (67%), Gaps = 6/589 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||||||||| || | ||||||||||| ||| | ||| ||||| || || | Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||||| || | ||||| ||||||||||| | ||| ||||||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATC 46809 || ||||| ||| || || || | | |||||| | || || || ||| Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCAACCTCTCTGCAAAAGATTCAGAGGAATTGATC 2993860 Query 46810 CACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 46869 || || | ||||| || || ||||| ||||| || | ||||| | ||| | || Sbjct 2993859 CATTTTAGCGCCCAGTCTGCTTTTTTGGCAACACAGGGAACCGTTTCAACAGCCCTGAAC 2993800 Query 46870 AGAAAGtttttttCATCACT---ATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 | | | ||| ||||| ||| || | || | || | || || || ||||| Sbjct 2993799 A--ATCGACTCTTC-TCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCTGTACATC 2993743 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || ||||||||||| || ||||| || || || ||| || || || | || Sbjct 2993742 TCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTCTGCAACT 2993683 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || ||||| | ||||| | | | || ||| ||||| |||||| ||| ||| Sbjct 2993682 TGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGAAGCTGCA 2993623 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 || || || | ||||| | || || | |||||| | | ||| || || ||||| Sbjct 2993622 AAGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATCCCAGTGC 2993563 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 | | |||| || | ||| || |||||||| |||||||| || ||||||||||| ||| Sbjct 2993562 TGAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGCTTTCTTA 2993503 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTAT 47215 ||||| | ||| || | |||||| || ||||| || ||||| || Sbjct 2993502 TACATCTCCCAAATTTGGGGATATTTTATGGGAAACATGCAAAATCGAT 2993454 >seq1199 Length=7341449 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||| | ||||||| || |||| ||||||||| || |||||| |||| | | ||| Sbjct 5062658 CTCGCGTTCATATCTAGTGTATAGTTCTTCAAATTCCTCGCCCCAACAATCAGCTAGACC 5062717 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 | | |||||| ||||| | ||| ||||| || |||| ||||| |||| | ||||||| Sbjct 5062718 TGTAGCTTCATTGGGACAAAACAAGGACCATTCCCCATTTTCCTGGACCCTTCTCATAAA 5062777 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 ||||||||| | ||| || ||| ||| ||||| Sbjct 5062778 GAGATCAGGCACCCAAAGTGCATAAAAGAGATC 5062810 >seq5085 Length=15980527 Score = 96.9 bits (106), Expect = 5e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | |||||| ||||| | ||| | || | || |||||| || ||||| Sbjct 1681011 ACCCCCTTGATCAACATATCTTGCAGTATCATTGAAGACACGCAGCATTGGGATTATGCC 1681070 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || || | ||||||||| ||| ||||||||||| || | |||||| | ||| Sbjct 1681071 ATTTGAGGCACCATTTGTACCACGTATATAACTTCCTGTTGATCTGATATTATGGACAGA 1681130 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 ||||| || ||||| || ||| || | ||||| |||| ||| | || || Sbjct 1681131 AAGGCCAATACCTCCAGCTGATTTGCTAATGACTGCACACTCCTTCAGTGTATTGTATAT 1681190 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 ||||| |||| ||| || ||||| | |||||| |||||| Sbjct 1681191 ACCCTCAATACCATCCTCTTTCATGCACACAAGAAAGCAGCTA 1681233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712883193486720