Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2419 159 8e-34 seq461 154 3e-32 seq3426 152 1e-31 seq21 141 2e-28 seq1199 134 3e-26 seq5571 98.7 2e-15 seq5 96.9 8e-15 >seq2419 Length=5026 Score = 159 bits (176), Expect = 8e-34 Identities = 171/224 (76%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | || ||||||||| ||||| || ||||| |||||||||||||||||||| || || Sbjct 4993 CCTCAATCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATCGGCCAATGT 4934 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | ||||| || || ||||| || || ||||| | | ||||||||| | | |||| Sbjct 4933 ACGGCCATCCTCGAGCTGCTTT--CCAGCAAAGATCAAGCGCTGCTGGTCAGGGGGGATT 4876 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 || ||||| ||||| || || || ||| | || | | |||| || ||||| || ||| Sbjct 4875 CCCTCCTTATCTTGGATCTTAGCCTTAACATTGTCAATGGTGTCCGAGCTCTCAACCTCA 4816 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||| || || ||||| || |||| |||||| Sbjct 4815 AGAGTAATAGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 4772 >seq461 Length=5900637 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| |||||||| || ||||| || ||||| |||||||| || | || ||| Sbjct 2470309 AGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTC 2470250 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||||| || ||||| |||||||||||||| | | ||| || ||| Sbjct 2470249 CCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCC 2470190 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || |||||||| |||||| | || | | | || || ||||| || ||||| ||| Sbjct 2470189 TTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCACCTCAAGGGTA 2470130 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||||||| || || | |||||| Sbjct 2470129 ATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCAT 2470092 Score = 129 bits (142), Expect = 1e-24 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| ||||||||||| || || || ||||| || |||||||| ||||| || | || Sbjct 2468945 CCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCAAGTGT 2468886 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | |||||||| | ||||| || || || || | ||||||||||| | | ||| Sbjct 2468885 ACGTCCATCTTCCAATTGCTTT--CCAGCAAAAATCAATCTCTGCTGGTCAGGGGGGATG 2468828 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 |||||||| || || || ||| || ||| | || | | |||| || |||||||| || Sbjct 2468827 CCTTCCTTGTCCTGGATCTTTGCCTTTACATTGTCGATGGTGTCAGAGCTCTCTACCTCG 2468768 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || || | ||||| || |||| |||||| Sbjct 2468767 AGAGTGATGGTCTTTCCAGTCAAGGTCTTAACAAAGATCTGCAT 2468724 Score = 123 bits (136), Expect = 6e-23 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| ||||||||||| || || || ||||| ||||||||||| || || || | ||| Sbjct 2469173 CCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATAGTCAGCAAGAGT 2469114 Query 151943 TCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATT 152000 | ||||| || | ||||| || || || || | ||||||||||| | | || Sbjct 2469113 ACGGCCATCCTCCAATTGCTTT--CCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATG 2469056 Query 152001 CCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCA 152060 |||||||| || || || ||| || ||| | |||| | |||| || ||||| || || Sbjct 2469055 CCTTCCTTGTCCTGTATCTTTGCCTTTACATTGTCTATGGTGTCAGAGCTCTCAACCTCC 2468996 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || || || || || |||| |||||| Sbjct 2468995 AGGGTGATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || ||||| || | ||||| |||||||| ||||| ||||||||||| || | ||| | Sbjct 2469397 AGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCTGCAAGAGTGCGA 2469338 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || | ||||| || ||||| ||||| ||||| || | | ||| |||||| Sbjct 2469337 CCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATCGGGAGGGATCCCTTCC 2469278 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | || | | ||||| ||||| || ||||| || Sbjct 2469277 TTGTCCTGGATCTTGGCCTTTACATTGTCAATAGTATCTGAGCTCTCGACCTCAAGGGTG 2469218 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || || ||||||| ||||| Sbjct 2469217 ATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 2469180 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || || || ||||| || || ||||| || || || || || ||||| | || | Sbjct 2469625 AGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCGAGGGTACGG 2469566 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | || ||||| || || | ||| |||||||| | | |||||| ||| Sbjct 2469565 CCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCCTCC 2469506 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | || | ||||||||||||| || || | ||| Sbjct 2469505 TTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTCAACCTCCAAAGTG 2469446 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||| |||||||| || | ||||| Sbjct 2469445 ATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGCAT 2469408 >seq3426 Length=3004207 Score = 152 bits (168), Expect = 1e-31 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 |||||||| || || |||||||||||||| || || ||||| |||||||| |||| ||| Sbjct 2139214 CTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCTAGTGTT 2139155 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||| || |||||||| || | ||||| || | | ||| || Sbjct 2139154 CGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCCC 2139095 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || || || || |||||| | || || | || || ||||| || ||||| Sbjct 2139094 TCTTTGTCCTGGATCTTGGCCTTGACATTGTCAACTGTATCAGAGCTCTCGACCTCAAGG 2139035 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || ||||| || || |||||||||| ||||||||| Sbjct 2139034 GTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 2138991 >seq21 Length=3941259 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || ||||| || | || || || ||||| |||||||| |||||||| || | |||||| Sbjct 1371977 AGCCTGAGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCAAGAGTTCTG 1371918 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || || || ||||| ||||||||||| || | | |||||| ||| Sbjct 1371917 CCATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGGATTCCCTCC 1371858 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || || ||| | || | |||| || ||||| || ||||||||| Sbjct 1371857 TTATCCTGAATCTTGGCCTTCACATTATCGATAGTGTCCGAGCTCTCGACCTCAAGAGTA 1371798 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| || |||| |||||| Sbjct 1371797 ATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || ||||| || | ||| |||||||||||||| ||||||||||| ||||| | ||| | Sbjct 1372205 AGCCTGAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCAAGAGTCCGA 1372146 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || || || || || || || || |||||||| | | || || ||| Sbjct 1372145 CCATCCTCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGAATACCCTCC 1372086 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || || || | || | |||| || ||||| || || |||||| Sbjct 1372085 TTGTCTTGAATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCGACCTCGAGAGTA 1372026 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| || |||| |||||| Sbjct 1372025 ATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 111 bits (122), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || ||||| |||| ||||||||||||||||| ||||| || || || || | || || Sbjct 1372432 AGCCTGAGACCAAG-TGAAGAGTAGACTCTTTCTGGATATTATAGTCAGCAAGGGTCCTT 1372374 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || || ||| || || || || ||||| |||||||| | | || || ||| Sbjct 1372373 CCATCCTCAAGCTGTTTACCAGCAAAAATTAGCCTTTGCTGGTCAGGGGGAATACCCTCC 1372314 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| || || | || | | ||||| || || || || || ||| Sbjct 1372313 TTGTCTTGAATTTTAGCCTTCACGTTGTCAATTGTATCTGAGCTTTCAACCTCCAGGGTA 1372254 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || | ||||| ||||| | ||||| Sbjct 1372253 ATGGTCTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 1372216 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || ||||| || ||||| ||||| ||||| | || | ||||| || || Sbjct 1372646 ATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTCCGGCCATCCTCAAGCTG 1372587 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || ||||||||||||||||| | || |||||| ||||| ||||||||||| Sbjct 1372586 TTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGGATTCCCTCCTTATCTTGAATTTT 1372527 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || || | || | | || || ||||| || || | ||||| || ||||| || Sbjct 1372526 GGCCTTCACGTTATCAATTGTATCCGAGCTCTCAACCTCCAAGGTAATGGTCTTGCCAGT 1372467 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || | ||||| Sbjct 1372466 CAAGGTTTTGACAAAAATTTGCAT 1372443 Score = 102 bits (112), Expect = 2e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| || || ||||| || ||||| ||||| || || | || | ||||| Sbjct 1372883 GAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCATC 1372824 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| | ||||||||| || | | || || ||||| || Sbjct 1372823 CTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTC 1372764 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || || ||| | || | | | || || || || |||||||||||||| || Sbjct 1372763 TTGGATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGT 1372704 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || ||||| || || | ||||||| Sbjct 1372703 CTTGCCGGTCAGGGTCTTAACAAAAATCTGCATT 1372670 >seq1199 Length=7341449 Score = 134 bits (148), Expect = 3e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| || || ||||||||||| |||||||| ||||| |||||||| |||| ||| Sbjct 1127647 CTAAGTCTCAGAACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCTAGGGTT 1127706 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || || || |||||||| || | || || || | | || || Sbjct 1127707 CGGCCATCTTCGAGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCCC 1127766 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || || ||||| |||||| | || | | || || ||||| || |||||| Sbjct 1127767 TCTTTGTCCTGGATTTTGGCCTTGACATTGTCGATCGTATCGGAGCTCTCGACCTCAAGA 1127826 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || ||||| || || || || ||||||| |||||| || Sbjct 1127827 GTAATGGTCTTGCCAGTTAGGGTTTTTACGAAGATCTGCATCTT 1127870 >seq5571 Length=10537363 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| || || |||||||| || |||||||||||||| || | || | Sbjct 10537228 GAGACGGAGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACG 10537287 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||||| || ||||| ||||| |||||||| | | ||| ||||| Sbjct 10537288 ACCATCCTCGAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCGGGGGGGATGCCTTC 10537347 Query 152006 CTTTTCTTGAAT 152017 ||| |||||||| Sbjct 10537348 CTTGTCTTGAAT 10537359 >seq5 Length=3793322 Score = 96.9 bits (106), Expect = 8e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| || || |||||||| || |||||||||||||| || | || | Sbjct 135 GAGACGGAGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACG 76 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || ||||| || ||||| ||||| ||||||| || | ||| ||||| Sbjct 75 ACCATCCTCGAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGT-CGGGGGGATGCCTTC 17 Query 152006 CTTTTCTTGAATTTT 152020 ||| |||||||| || Sbjct 16 CTTGTCTTGAATCTT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153735854991566