Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq21 165 2e-35 seq461 154 3e-32 seq2419 145 2e-29 seq3426 127 4e-24 seq5571 89.7 1e-12 seq5 87.8 4e-12 >seq21 Length=3941259 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || | || |||| ||| | || ||||| |||||||||||||| ||| Sbjct 1372214 CCCCCACGAAGCCTGAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAGTCGGCA 1372155 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| ||||| || || ||||| || | | ||| |||||| ||| Sbjct 1372154 AGAGTCCGACCATCCTCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTCAGGAGGA 1372095 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 ||||||||||||||||| ||||| || || ||| | || |||||||| | |||| ||||| Sbjct 1372094 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATAGTGTCAG-AGCTCTCGAC 1372036 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| || ||||| || || | ||||| || || |||||||| Sbjct 1372035 CTCGAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || |||| ||| | ||| || || ||||| |||||||| || Sbjct 1372898 ACCCCCACGAAGGCGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGC 1372839 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||| || || || || ||||||||||| | || || ||| || Sbjct 1372838 CAGGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGG 1372779 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||||||||| | || || | || || || ||||| ||| || Sbjct 1372778 AATCCCCTCCTTGTCTTGGATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCAC 1372719 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| ||||| || ||||| || |||| |||||||| || ||||||||| Sbjct 1372718 TTCAAGAGTAATGGTCTTGCCGGTCAGGGTCTTAACAAAAATCTGCATT 1372670 Score = 147 bits (162), Expect = 5e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || | || |||| |||| ||| || |||||||| ||||| |||||| Sbjct 1371986 CCCCCACGAAGCCTGAGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATCAGCA 1371927 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||||||| ||||| || || |||||||| | | || || ||| || Sbjct 1371926 AGAGTTCTGCCATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCAGGGGGG 1371867 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || |||||||| || || ||||| || || || ||||||||||||||| |||| ||||| Sbjct 1371866 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTATCGATAGTGTCCG-AGCTCTCGAC 1371808 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || ||||| || || | ||||| || || |||||||| Sbjct 1371807 CTCAAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 Score = 138 bits (152), Expect = 2e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||| || ||||||||||| || | |||||||| || ||||| || ||||| Sbjct 1372406 TCTTTCTGGATATTATAGTCAGCAAGGGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAA 1372347 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | ||| |||||| |||||||||||||||||||| || || || || ||| | Sbjct 1372346 ATTAGCCTTTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATTTTAGCCTTCACGTTG 1372287 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || || || ||| || || || || || ||||| || ||||| ||||| ||| Sbjct 1372286 TCAATTGTATCTGAGCTTTCAACCTCCAGGGTAATGGTCTTGCCAGTCAAGGTCTTGACG 1372227 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 1372226 AAAATTTGCAT 1372216 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || | | |||| ||| | ||| || || ||||| |||||||| ||| Sbjct 1372669 CCTCCACGGAGCCTCAACACCAAATGGAGTGTGGACTCCTTCTGGATATTGTAGTCGGCA 1372610 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||||||||| || ||||| || ||||| || | | || |||||| ||| Sbjct 1372609 AGGGTCCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCAGGCGGG 1372550 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || |||||||| ||||| || || || || ||| |||| || || |||| |||| || || Sbjct 1372549 ATTCCCTCCTTATCTTGAATTTTGGCCTTCACGTTATCAATTGTATCCG-AGCTCTCAAC 1372491 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || || ||||| || ||||| || || || || || ||||| Sbjct 1372490 CTCCAAGGTAATGGTCTTGCCAGTCAAGGTTTTGACAAAAATTTGCAT 1372443 >seq461 Length=5900637 Score = 154 bits (170), Expect = 3e-32 Identities = 151/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||| || |||||||| || || ||||| || | ||| || || ||||| Sbjct 2468914 TCCTTCTGGATGTTATAATCAGCAAGTGTACGTCCATCTTCCAATTGCTTTCCAGCAAAA 2468855 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| | || |||||| || || || |||||||| ||||||||||| ||||| | Sbjct 2468854 ATCAATCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTTACATTG 2468795 Query 283029 TCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| || ||| || || ||||||||||| ||||| || ||||| |||||||| Sbjct 2468794 TCGATGGTGTCAGA-GCTCTCTACCTCGAGAGTGATGGTCTTTCCAGTCAAGGTCTTAAC 2468736 Query 283088 GAATATCTGCAT 283099 || |||||||| Sbjct 2468735 AAAGATCTGCAT 2468724 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || | ||| |||||||| | ||| || || || || || ||||| || Sbjct 2469635 ACCCCCACGAAGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGC 2469576 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || | ||| || |||||||| ||||| | ||| |||||| || Sbjct 2469575 GAGGGTACGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGG 2469516 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || || |||| |||||||| ||| || || Sbjct 2469515 GATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTCAAC 2469456 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| || ||||| || | ||||| || || || ||||| Sbjct 2469455 CTCCAAAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGCAT 2469408 Score = 138 bits (152), Expect = 2e-27 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||| ||| | ||| || || ||||| ||||| ||||| || || | |||||| Sbjct 2470075 AGGACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCC 2470016 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || | ||| || ||||||||||||| | ||| |||||| || || || |||||||| Sbjct 2470015 TCCAATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 2469956 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGT 283066 || ||||||| || || ||||||| |||||||| ||| || || || | |||||||| Sbjct 2469955 TGAATCTTTGACTTCACATTATCGATGGTGTCCGA-GCTCTCAACCTCCAATGTGATCGT 2469897 Query 283067 CTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| |||| ||||| || || || ||||| Sbjct 2469896 CTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 Score = 136 bits (150), Expect = 8e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||||||||| ||||||||||| || ||||||||||| | ||| || || ||||| Sbjct 2469142 TCCTTTTGGATGTTATAGTCAGCAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAA 2469083 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || || | || |||||| ||||| || |||||||| || |||||||| ||||| | Sbjct 2469082 ATTAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGTATCTTTGCCTTTACATTG 2469023 Query 283029 TCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| | |||| || || || || ||||| || || || || | || ||||| Sbjct 2469022 TCTATGGTGTCAG-AGCTCTCAACCTCCAGGGTGATGGTTTTCCCAGTTAGGGTTTTAAC 2468964 Query 283088 GAATATCTGCAT 283099 || |||||||| Sbjct 2468963 AAAGATCTGCAT 2468952 Score = 131 bits (144), Expect = 4e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || | || |||| || | ||| || ||||| ||||||||||| || Sbjct 2469863 ACCCCCACGAAGCCTGAGAACCAAGTGGAGGGTGGACTCCTTTTGAATGTTGTAGTCCGC 2469804 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || |||||||||| ||| || || || ||||| | | |||||||| || Sbjct 2469803 GAGAGTACGACCATCCTCTAATTGCTTACCAGCGAAGATGAGCCTCTGTTGGTCGGGAGG 2469744 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 || || |||||||| ||||||||||| || || |||| || || |||| |||| || | Sbjct 2469743 GATCCCTTCCTTGTCCTGGATCTTTGCCTTGACATTATCAATGGTATCCG-AGCTCTCAA 2469685 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || || ||||| || |||| || ||||| || |||||||| Sbjct 2469684 CCTCCAGGGTAATGGTCTTTCCAGTCAGGGTTTTAACAAAGATCTGCAT 2469636 Score = 122 bits (134), Expect = 2e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | ||| || || ||||| ||||| ||||| Sbjct 2470319 ACCACCACGAAGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGC 2470260 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | ||||| || || || ||||| |||||||| | | || ||||| || Sbjct 2470259 AAGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGG 2470200 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 || ||||||||||| || || || || || || | || || || | || |||| || | Sbjct 2470199 GATGCCCTCCTTGTCCTGAATTTTCGCCTTGACATTGTCAATGGTAT-CGGAGCTCTCCA 2470141 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || || ||||| || || | ||||||||| || |||||||| Sbjct 2470140 CCTCAAGGGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCAT 2470092 >seq2419 Length=5026 Score = 145 bits (160), Expect = 2e-29 Identities = 149/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||| || || | || ||||||||||| || || || || |||||| Sbjct 4962 TCCTTTTGGATGTTGTAATCGGCCAATGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAG 4903 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| || || |||||| || || |||||||| ||||||||||| || || || | Sbjct 4902 ATCAAGCGCTGCTGGTCAGGGGGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACATTG 4843 Query 283029 TCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||||| |||| || || || ||||| || ||||| || || | |||||||| Sbjct 4842 TCAATGGTGTCCG-AGCTCTCAACCTCAAGAGTAATAGTCTTGCCTGTAAGGGTCTTAAC 4784 Query 283088 GAATATCTGCAT 283099 || |||||||| Sbjct 4783 AAAGATCTGCAT 4772 >seq3426 Length=3004207 Score = 127 bits (140), Expect = 4e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 282888 AGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCC 282947 || |||||||| | || ||| || ||||| ||||| ||||| || || |||||||| Sbjct 2139205 AGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCTAGTGTTCGGCCATCT 2139146 Query 282948 TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCT 283007 || || ||||| || || ||||| | ||||| || || || || ||||| ||||| Sbjct 2139145 TCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGGATGCCCTCTTTGTCC 2139086 Query 283008 TGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGACTTCGAGAGTGATCGT 283066 |||||||| || || || | || | || || || ||| ||||| || || || || || Sbjct 2139085 TGGATCTTGGCCTTGACATTGTCAACTGTATCAGA-GCTCTCGACCTCAAGGGTAATGGT 2139027 Query 283067 CTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||||||| | || || ||||| |||||||||||| Sbjct 2139026 CTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTTC 2138990 >seq5571 Length=10537363 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || || || | || || || ||||||||||| || ||| Sbjct 10537220 CCACCACGGAGACGGAGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCA 10537279 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| || || ||||| |||||||| | | ||| ||||| || Sbjct 10537280 AGGGTACGACCATCCTCGAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTCGGGGGGG 10537339 Query 282993 ATACCCTCCTTGTCTTGGATCT 283014 || || ||||||||||| |||| Sbjct 10537340 ATGCCTTCCTTGTCTTGAATCT 10537361 >seq5 Length=3793322 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || || || | || || || ||||||||||| || ||| Sbjct 143 CCACCACGGAGACGGAGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCCGCA 84 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || |||||||| || || ||||| |||||||| | | ||| ||||| || Sbjct 83 AGGGTACGACCATCCTCGAGCTGCTTCCCTGCAAAGATGAGCCTTTGCTGGTC-GGGGGG 25 Query 282993 ATACCCTCCTTGTCTTGGATCTT 283015 || || ||||||||||| ||||| Sbjct 24 ATGCCTTCCTTGTCTTGAATCTT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046662138405884