Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq922 131 2e-25 seq557 102 8e-17 >seq922 Length=8123900 Score = 131 bits (144), Expect = 2e-25 Identities = 393/599 (66%), Gaps = 17/599 (3%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||||||||| |||| |||||||| || ||| | ||||||||| || ||||| Sbjct 2994039 CAAGCAAAATCACAGTGTAAACCTTCATCTCTTGAAATGAGTTCATTAGAGAAGGTTAAA 2993980 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || |||||||| || | |||||| | ||||||||| | | ||| || |||||||| Sbjct 2993979 CCAGGCATTAAACCCCTTTTTTTTAGCCAAAATATGGAACAAAAACTACCAGAAAAGAAG 2993920 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGT-ACCAAATGTTGCATTATAATCAGA 23687 ||||| |||||| ||||| || | | || | | |||| | | || ||| Sbjct 2993919 ATACCTTCAACACAGGCAAAAGCAATCA-ACCTCTCTGCAAAAGATTCAGAGGAAT---T 2993864 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTT---TACACACTCAATTGTTTCAATTGC 23744 ||||||||| | ||| | || || ||| ||||| || ||||||| || Sbjct 2993863 GATCCATTTTAGCGCCCAGTCTGCTTT---TTTGGCAACACAGGGAACCGTTTCAACAGC 2993807 Query 23745 TTTTAAGAGAAAAGTTTTTTCTTCATT---ATCTGTTATATATGTATCAATTAGTAAACT 23801 | | | || | | ||| ||| | ||| | || || | |||| | | || Sbjct 2993806 CCTGA--ACAATCGACTCTTC-TCACTGGAATCCTTGATGTAAGATTCAAGCAAGAGGCT 2993750 Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||||| ||||| || || |||||||| || ||||| || ||||| ||| ||||| || Sbjct 2993749 GTACATCTCAGAGTGGATGTTTTCAATGGCGATCTGGAAGCCATAGAAAGCCCTAGCCTC 2993690 Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 | | |||||| || || | |||| || | ||||| || ||||||||| Sbjct 2993689 TGCAACTTGAACCTCCTTCATGAATCGACCCGCAAGGTTTTCAAGGACTATACCATCAGA 2993630 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTT 23981 ||| |||||||||||||| |||| |||| || ||| |||| ||| | | | Sbjct 2993629 AGCTGCAAAGAAAGCAAGGACATGGGTTATGAAGTGTTTTTCCCCAGAAGTGAGAGAATC 2993570 Query 23982 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGC 24041 ||| | | || |||| || | ||| || || ||| | ||||| ||| ||| || Sbjct 2993569 CCAGTGCTGAAGGTCTTGAGAGAGATCGACCTCTTCAGCAGTCCAGAAAGAGGCCTCTGC 2993510 Query 24042 ACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATCAG 24100 ||||||||| |||||| | || || ||| ||||| || |||| ||||| Sbjct 2993509 TTTCTTATACATCTCCCAAATTTGGGGATATTTTATGGGAAACATGCAAAATCGATCAG 2993451 >seq557 Length=6368207 Score = 102 bits (112), Expect = 8e-17 Identities = 94/118 (80%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 23495 ACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCAT 23554 || || |||| ||||| ||||||||||||||||| || ||||| || || | ||||| Sbjct 1405734 ACCTATACAACAAACAAGCAAAATCACAATGTAGACCCTCATCTCTTGAGATAAGTTCAT 1405793 Query 23555 TAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAA 23612 | || || |||||||| ||||| || ||||| ||||||| |||||| || ||| |||| Sbjct 1405794 TCGAGAAGGTTAATCCAGGCATCAAACCTCGCTTTTTAAGCCAAAAAATGGCA-CAAA 1405850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521450544124400