Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2419 127 1e-24 seq461 125 5e-24 seq21 113 3e-20 seq3426 105 5e-18 >seq2419 Length=5026 Score = 127 bits (140), Expect = 1e-24 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| || | || |||||||| || ||||||||||||||||||||| Sbjct 5002 CATGCCTCCCCTCAATCGGAGGACAAGGTGAAGGGTCGACTCCTTTTGGATGTTGTAATC 4943 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| | | || | || || |||||||| || ||||||||||| |||||||| || | Sbjct 4942 GGCCAATGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCAGG 4883 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 || | || ||||| || ||||| ||| || ||| | |||||||| | | Sbjct 4882 GGGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACATTGT--CAATGGTGTCCGAGCTC 4825 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | ||||| ||||| || || |||||||| || ||||| ||||| Sbjct 4824 TCAACCTCAAGAGTAATAGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 4772 >seq461 Length=5900637 Score = 125 bits (138), Expect = 5e-24 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| || || | ||||| |||||| || ||||||||| |||||||| Sbjct 2469413 TTGCATGCCGCCTCGAAGCCTGAGCACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTA 2469354 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || || ||| | || |||| ||||||||| |||||||| | | |||||||| Sbjct 2469353 ATCTGCAAGAGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGCCTTTGCTGATC 2469294 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | ||| | |||||||| ||| ||||| ||| || ||| | || || || | | Sbjct 2469293 GGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGT--CAATAGTATCTGAG 2469236 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| | || || ||||| || || ||||| || ||||||||||||||| Sbjct 2469235 CTCTCGACCTCAAGGGTGATTGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCATG 2469179 Score = 114 bits (126), Expect = 9e-21 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||| || || || ||||| ||| |||||| ||||| |||||||| || || | | Sbjct 2470309 AGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTC 2470250 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || ||||||||||| |||||||| | | |||||| |||| || | || ||| Sbjct 2470249 CCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATGCCCTCC 2470190 Query 44240 TTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 || ||| || ||| ||| || ||| | ||||| |||| | |||||||| | | Sbjct 2470189 TTGTCCTGAATTTTCGCCTTGACATTGT--CAATGGTATCGGAGCTCTCCACCTCAAGGG 2470132 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||| |||||||| || || ||||| || || || |||||| Sbjct 2470131 TAATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCATG 2470091 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| || | |||| || || ||| |||||| ||||| |||||||| Sbjct 2470094 CATGCCACCCCTCAACCTGAGGACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATC 2470035 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || | | || |||| ||||| ||||||||||||| | ||||| || | Sbjct 2470034 AGCCAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGG 2469975 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| ||| ||||| ||||| | | |||||||| | | || Sbjct 2469974 AGGGATGCCTTCCTTGTCCTGAATCTTTGACTTCACATTATCGATGGTGTCCGAGCTCTC 2469915 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || |||||||| || || |||||||| || || |||||||| Sbjct 2469914 AACCTCCAATGTGATCGTCTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 Score = 105 bits (116), Expect = 5e-18 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || || || || | || ||||| || ||| ||||||||||||||| || Sbjct 2469185 TTGCATGCCACCCCTGAGCCTGAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTATA 2469126 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || || || | || |||| ||||| || ||||| || || | |||||| || Sbjct 2469125 GTCAGCAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAATCTCTGCTGGTC 2469066 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCG 44281 | || | |||||||| ||| |||||| ||| || ||| |||||||||| | | Sbjct 2469065 AGGGGGAATGCCTTCCTTGTCCTGTATCTTTGCCTTTACATTGT--CTATGGTGTCAGAG 2469008 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| || || || || || || ||||| || || ||||| ||||| Sbjct 2469007 CTCTCAACCTCCAGGGTGATGGTTTTCCCAGTTAGGGTTTTAACAAAGATCTGCAT 2468952 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||| | || || | |||||| || || ||| |||||| || || || || || Sbjct 2469638 CATACCCCCACGAAGCCTAAGCACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTC 2469579 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 |||||| || | || |||| ||||| |||||||| ||||| | ||||| || | Sbjct 2469578 GGCGAGGGTACGGCCATCTTCCAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGG 2469519 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||| | | | || ||||| | || Sbjct 2469518 GGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAACTCTC 2469459 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||| || || || || || |||||||||||||| || ||||||||| Sbjct 2469458 AACCTCCAAAGTGATGGTTTTACCAGTGAGGGTCTTCACAAAAATTTGCATG 2469407 >seq21 Length=3941259 Score = 113 bits (124), Expect = 3e-20 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| ||||| | || || | ||||| ||| || ||| |||||||||||| |||||||| Sbjct 1371990 CATCCCCCCACGAAGCCTGAGCACCAAGTGTAGTGTGGACTCCTTTTGGATATTGTAATC 1371931 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || ||||| || | || || || ||||| || |||||||| | | ||||||||| Sbjct 1371930 AGCAAGAGTTCT-GC-CATCCTCAAGTTGCTTACCAGCAAAGATGAGCCTCTGCTGATCA 1371873 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | || ||||| ||| ||||| ||||| | | || ||||| | | Sbjct 1371872 GGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTATCGATAGTGTCCGAGCTC 1371813 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | ||||| ||||| || ||||||||||| || ||||| ||||| Sbjct 1371812 TCGACCTCAAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371760 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| || || ||| |||||| ||||| ||||| || || || || | || || Sbjct 1372880 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCCAGGGTACGACCATCCTC 1372821 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| || ||||||||||| | ||||||||| | || | || ||||| || Sbjct 1372820 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCAGGTGGAATCCCCTCCTTGTCTTG 1372761 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||||| | | ||||| || | | |||||| || | ||||| ||||| Sbjct 1372760 GATCTTCGTCTTCACATTGTCAATGGTATCCGAGCTTTCCACTTCAAGAGTAATGGTCTT 1372701 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| || || || ||||| Sbjct 1372700 GCCGGTCAGGGTCTTAACAAAAATCTGCAT 1372671 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| ||||| | || || | ||||| || || || ||| || ||||||||||| Sbjct 1372221 TTGCATGCCCCCACGAAGCCTGAGCACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTA 1372162 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || || | || || || ||||| || ||||| || | | ||||| || Sbjct 1372161 GTCGGCAAGAGTCCGACCATCCTCGAGTTGCTTACCAGCAAAAATTAGTCTTTGCTGGTC 1372102 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | ||| ||||| || ||||| ||||| | | || ||||| | | Sbjct 1372101 AGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATAGTGTCAGAGCT 1372042 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | ||||| ||||| || ||||||||||| || ||||| ||||| Sbjct 1372041 CTCGACCTCGAGAGTAATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 1371988 >seq3426 Length=3004207 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| ||||||| ||||| ||||| || ||||| ||||| |||||||| || Sbjct 2139220 CCTCCTCTGAGTCTCAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCAGCT 2139161 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| || | || || ||||| || || || ||||| | || |||||||||| || Sbjct 2139160 AGTGTTCGGCCATCTTCAAGCTGTTTGCCTGCGAAGATGAGGCGTTGCTGATCTGGTGGG 2139101 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || || || ||| ||||| ||| || ||| | | || || | | || | Sbjct 2139100 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTGT--CAACTGTATCAGAGCTCTCGA 2139043 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | ||||| ||||| ||||| ||||| ||||||||||| ||||| Sbjct 2139042 CCTCAAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2138994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359965190097282