Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3426 170 5e-37 seq461 165 2e-35 seq1199 152 1e-31 seq21 147 5e-30 >seq3426 Length=3004207 Score = 170 bits (188), Expect = 5e-37 Identities = 175/228 (77%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||||||||| || || || || || || ||||| ||||| || Sbjct 2138991 AAAATGC---AGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTTGAGGTCGAG 2139047 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| || || | || || ||||| ||||| ||||||||||| || ||||| || Sbjct 2139048 AGCTCTGATACAGTTGACAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCA 2139107 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || |||||||| || |||||||| || |||||||| |||||||| | || || || ||| Sbjct 2139108 GATCAGCAACGCCTCATCTTCGCAGGCAAACAGCTTGAAGATGGCCGAACACTAGCTGAT 2139167 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || |||| || ||||| || || ||||| ||| ||||||||||| Sbjct 2139168 TACAATATCCAGAAGGAATCTACTCTTCATCTGGTTCTGAGACTCAGA 2139215 >seq461 Length=5900637 Score = 165 bits (182), Expect = 2e-35 Identities = 157/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || || |||||||| | ||||| || ||||| ||| Sbjct 2469867 CAAATTTTTGTCAAGACCCTGACTGGTAAGACGATCACATTGGAGGTTGAGAGCTCGGAC 2469926 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||||||||||||| ||||| |||||||| ||||||||| Sbjct 2469927 ACCATCGATAATGTGAAGTCAAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCAGCAA 2469986 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || || | || |||||||||||||| || ||||| || || Sbjct 2469987 AGGCTGATCTTTGCCGGCAAGCAATTGGAGGATGGAAGGACTCTGGCTGATTACAATATC 2470046 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 2470047 CAGAAGGAGTCCACCCTCCAT 2470067 Score = 159 bits (176), Expect = 8e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || ||||| || ||||| |||||||| || ||||| ||| Sbjct 2468727 CAGATCTTTGTTAAGACCTTGACTGGAAAGACCATCACTCTCGAGGTAGAGAGCTCTGAC 2468786 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||| |||||||| ||||| ||||| || |||||||| Sbjct 2468787 ACCATCGACAATGTAAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAG 2468846 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || | ||||||||| | || ||||| ||||||||| || Sbjct 2468847 AGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACACTTGCTGATTATAACATC 2468906 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 || || || || ||||| || ||||| | || ||||| Sbjct 2468907 CAGAAGGAGTCCACACTCCACCTTGTCCTCAGGCTCAG 2468944 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||||| || ||||| || || ||||| |||||||| ||||| || Sbjct 2470095 CAGATTTTTGTTAAGACTCTTACTGGAAAGACCATTACCCTTGAGGTGGAGAGCTCCGAT 2470154 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || ||||||||||| || || ||||| || |||||||| Sbjct 2470155 ACCATTGACAATGTCAAGGCGAAAATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAG 2470214 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| ||||| ||||| ||||| || || Sbjct 2470215 AGGCTCATCTTTGCTGGGAAGCAGCTTGAAGATGGGAGGACCCTTGCTGATTACAATATC 2470274 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || ||||| || || |||| Sbjct 2470275 CAGAAGGAGTCCACCCTTCATCTCGTCCTGCGACT 2470309 >seq1199 Length=7341449 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || || || || || ||||| || ||||| || Sbjct 1127864 CAGATCTTCGTAAAAACCCTAACTGGCAAGACCATTACTCTTGAGGTCGAGAGCTCCGAT 1127805 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| || || ||||||||||| || || || || || || ||| Sbjct 1127804 ACGATCGACAATGTCAAGGCCAAAATCCAGGACAAAGAGGGCATACCACCAGATCAACAA 1127745 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || |||||||||||||| | || || || ||||| || || Sbjct 1127744 CGCCTCATCTTCGCAGGTAAGCAGCTCGAAGATGGCCGAACCCTAGCGGATTACAATATC 1127685 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || || || ||||| ||| ||||||| ||| Sbjct 1127684 CAGAAAGAGTCGACTCTTCATCTGGTTCTGAGACTTAGA 1127646 >seq21 Length=3941259 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || || || |||||||| || ||||| ||| Sbjct 1371991 CAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTCGAGGTCGAGAGCTCTGAC 1372050 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||| ||||| || || || ||||| ||||||||| Sbjct 1372051 ACTATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCTGACCAGCAA 1372110 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || || || || || || ||||| ||||| ||||||||||||| || ||| || Sbjct 1372111 AGACTAATTTTTGCTGGTAAGCAACTCGAGGATGGTCGGACTCTTGCCGACTACAACATC 1372170 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| || || || ||| Sbjct 1372171 CAGAAAGAGTCTACTCTCCAT 1372191 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || || || || ||||| ||||| ||||||||||| Sbjct 1372219 CAAATTTTCGTCAAGACCTTGACTGGCAAGACCATTACCCTGGAGGTTGAAAGCTCAGAT 1372278 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || ||||| ||||| || || || || || ||||||||| Sbjct 1372279 ACAATTGACAACGTGAAGGCTAAAATTCAAGACAAGGAGGGTATTCCCCCTGACCAGCAA 1372338 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || || || |||||||| || ||||||||||| ||||| || ||||| || Sbjct 1372339 AGGCTAATTTTTGCTGGTAAACAGCTTGAGGATGGAAGGACCCTTGCTGACTATAATATC 1372398 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 1372399 CAGAAAGAGTCTACTCTTCA-CTTG 1372422 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || || || || ||||| || ||||| ||| Sbjct 1371763 CAGATCTTTGTCAAGACCCTCACTGGGAAGACCATTACTCTTGAGGTCGAGAGCTCGGAC 1371822 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||||||||| || || |||||||| || || ||||| Sbjct 1371823 ACTATCGATAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCTGATCAGCAG 1371882 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || || || || ||||| || |||||||| ||||| || || Sbjct 1371883 AGGCTCATCTTTGCTGGTAAGCAACTTGAGGATGGCAGAACTCTTGCTGATTACAATATC 1371942 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || ||||| || |||| Sbjct 1371943 CAAAAGGAGTCCACACTACA-CTTG 1371966 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || || || || || || || ||||||||||| || Sbjct 1372674 CAGATTTTTGTTAAGACCCTGACCGGCAAGACCATTACTCTTGAAGTGGAAAGCTCGGAT 1372733 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| || ||||| || || || || || || ||||| Sbjct 1372734 ACCATTGACAATGTGAAGACGAAGATCCAAGACAAGGAGGGGATTCCACCTGATCAGCAG 1372793 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || || || |||||||| ||||| | || || || || || || || Sbjct 1372794 AGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCCTGGCGGACTACAATATC 1372853 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 1372854 CAGAAGGAGTCCACCCTCCAT 1372874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203642580556724