Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amborella_20trichopoda_20[refseq_20GCF_5F000471905.2_202013-09-30] 5,746 sequences; 706,495,326 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq461 109 5e-19 seq1199 87.8 2e-12 >seq461 Length=5900637 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||||||| || ||| |||||||||||| |||||||||| |||||| || | || || Sbjct 2469617 CACCAGATGGAGTGTGGACTCCTTCTGAATATTATAGTCGGCGAGGGTACGGCCATCTTC 2469558 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | ||||| ||||| || |||| | || ||||| | ||| | | |||||||||| Sbjct 2469557 CAATTGCTTACCGGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCCTCCTTGTCCTG 2469498 Query 41773 GATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||| || ||| | | | | | |||||| ||| ||||||| || || |||| Sbjct 2469497 GATCTTGGCCTTAACATTATCA-ATAGTGTCTGAACTCTCAACCTCCAAAGTGATGGTTT 2469439 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || ||||| || ||||| |||||| Sbjct 2469438 TACCAGTGAGGGTCTTCACAAAAATTTGCATG 2469407 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || ||| ||||||||| || || || || | Sbjct 2470318 CCACCACGAAGTCGCAGGACGAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCA 2470259 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | | || || |||||||| || || || || || | ||| ||||| | || Sbjct 2470258 AGGGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 2470199 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | || |||||||||| ||| |||| || | || | || | | ||| |||||| Sbjct 2470198 ATGCCCTCCTTGTCC-TGAATTTTCGCCTTGACATTGTCAATGGTATCGGAGCTCTCCAC 2470140 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || || || || ||||| || |||||||||||| Sbjct 2470139 CTCAAGGGTAATGGTCTTTCCAGTAAGAGTCTTAACAAAAATCTGCATG 2470091 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/215 (71%), Gaps = 12/215 (6%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| ||||||||| || || || || | || || | | || || Sbjct 2470072 ACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGAGTCCTTCCATCCTCC 2470013 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||||||||||| || ||||| | || ||||| | || | || ||||||||| || Sbjct 2470012 AATTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGAGGGATGCCTTCCTTGTCC-TG 2469954 Query 41774 ATTTTTTG-CTTCA-ACGA-CGACACAGTGTC---GCTCGACTCCACCTCCACCGTTATC 41827 | | |||| ||||| | | || | ||||| ||| ||| ||||||| || ||| Sbjct 2469953 AATCTTTGACTTCACATTATCG--ATGGTGTCCGAGCT---CTCAACCTCCAATGTGATC 2469899 Query 41828 GTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| ||||| || ||||| ||||| Sbjct 2469898 GTCTTACCAGTCAGGGTCTTGACAAAAATTTGCAT 2469864 >seq1199 Length=7341449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||| || || ||| ||||| || || || || | ||||| || | || ||| Sbjct 1127659 ACCAGATGAAGAGTCGACTCTTTCTGGATATTGTAATCCGCTAGGGTTCGGCCATCTTCG 1127718 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || ||||| || ||||| ||||| || | || | || ||| |||||| | Sbjct 1127719 AGCTGCTTACCTGCGAAGATGAGGCGTTGTTGATCTGGTGGTATGCCCTCTTTGTCCTGG 1127778 Query 41774 ATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||||| ||| || | || | || ||| ||| ||||| | || || || | Sbjct 1127779 ATTTTGGCCTTGACATTGTCG--ATCGTATCGGAGCTCTCGACCTCAAGAGTAATGGTCT 1127836 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || || || || |||||||| |||||||| || Sbjct 1127837 TGCCAGTTAGGGTTTTTACGAAGATCTGCATCTT 1127870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462270795015200