Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1245 98.7 1e-15 >seq1245 Length=60194 Score = 98.7 bits (108), Expect = 1e-15 Identities = 286/435 (66%), Gaps = 8/435 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||| ||| || ||||| || | || || | || |||| ||| || Sbjct 44541 CACGCGAAGTCGGTGTGCAGCCCCTCATCGCGGCTGATGAGCTCATTGGCAAAACAAAGG 44600 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||| || || ||||| || ||||| || |||| |||| ||||| || || ||| Sbjct 44601 CCGGGCATGAGTCCCCGCTTCTTCAGCCAGAAGATGG-CGCAGAATGACCCCGAGAAGTG 44659 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--ACCGGC-GCTGTCATG 24310 || || || || |||||||||| || || |||||| | |||| | || || Sbjct 44660 GATACCCTCCACGCATGCAAAGGCAACGAGCCTCTCTCCAAACGACCGTCCGCGCTCG-- 44717 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 |||||||| ||||| || |||||| | | ||||| || |||| || || || Sbjct 44718 -ATCCACTTGGTTGCCCAGTCCGCCTTCCTCTGGACACATGGGATTGAGTCGATGGCGCC 44776 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 || | | || || || | | || || || || | |||||| | || |||||| Sbjct 44777 GAACATCTCGTCCTTCTCCTGAGAGTCCTTCACGTAGGCATCAATGAGGAGGCTATACTG 44836 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 || || || ||| | ||||| ||||| || | |||||| | || || | ||| Sbjct 44837 CTCAGAGTGGATGGTCTCAATCGCCATCTGCATGGAGTAGAATGCCCGTGCTTCTGGAAT 44896 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 ||| || ||| | | || | || | ||||| || || ||||||||||| || Sbjct 44897 CTGCACCTCTGCAAAGAACCTGAGGGCCAGGTTTTCCAGGACAATCCCGTCACTGGCAGC 44956 Query 24551 AAAAAACGCCAATAC 24565 || || ||||| || Sbjct 44957 GAAGAAGGCCAACAC 44971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593708137362720