Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1541 143 2e-29 seq1776 122 7e-23 seq1465 84.2 2e-11 seq871 84.2 2e-11 seq1075 82.4 6e-11 >seq1541 Length=115782 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||||||||||||||| || | |||||||||||| || ||||||||||| ||| Sbjct 44991 CCACCCCGCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCC 45050 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | | ||||||||||| ||||| || | || || ||||||||||| || Sbjct 45051 AGGGTTCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 45110 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| || || | | ||| || || | | |||| Sbjct 45111 ATTCCTTCCTTGTCCTGAATCTTGGCCTTTACGTTGTCGATGGTGTCGCTTGACTCCACC 45170 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| ||||| | || || ||||| || ||||| Sbjct 45171 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCAT 45217 Score = 125 bits (138), Expect = 6e-24 Identities = 164/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| ||||||||||||| |||| || |||||||| || ||||| ||||| |||| Sbjct 43054 CCCCTC--AGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCA 43111 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| | | ||||||| ||| ||||| || ||||||| ||||||||||| || | Sbjct 43112 GGGTACGCCCATCCTCCAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGA 43171 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| |||||||| ||||| || || | | ||| || || | || ||| | Sbjct 43172 TGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCT 43231 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | || ||||||||||| || | |||||||| || || ||||| Sbjct 43232 CAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCAT 43277 Score = 104 bits (114), Expect = 2e-17 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| ||||||||||||| |||| || |||||||| |||||||| || || || | Sbjct 42826 CCCCTC--AGCCTGAGCACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAA 42883 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| | | ||||||| ||| ||||| ||| |||| || ||||||||||| || | Sbjct 42884 GGGTACGCCCATCCTCCAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGA 42943 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 || ||||| || ||||| ||||| | | | || || | | ||| | Sbjct 42944 TACCCTCCTTATCCTGAATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAACCT 43003 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | ||||||||||| || || | || |||||||| || ||||| Sbjct 43004 CTAGCGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||||| ||||||| || | ||| ||||||||||| ||||| ||||| ||| Sbjct 43279 CCTCCGCGCAGCCGTAGCACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCC 43338 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGC-TGGTCC 21062 ||||| | | ||||| ||||| ||||| ||| | || || | |||| |||||| Sbjct 43339 AGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTCC 43393 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 20961 CTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCG 21020 || || |||| ||||| ||||||||||| |||||||| ||||| |||||||| | Sbjct 44498 CTCAGAACCAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTCCTCCCA 44557 Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCC 21062 ||||||| ||| ||||| ||| | || || | |||||||||| Sbjct 44558 TCCTCCAACTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCC 44599 >seq1776 Length=305386 Score = 122 bits (134), Expect = 7e-23 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| ||||||||||||| || | |||||||||||| || || || || ||||| | Sbjct 214088 CCCCTC--AGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAA 214031 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| | | ||||||||||| ||||| || | ||||| ||||||||||| ||| | Sbjct 214030 GGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAA 213971 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 || || ||||| ||||| ||||| | | ||| || || | | |||| | Sbjct 213970 TTCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACCT 213911 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | ||| || ||||||||||| | || || ||||| || ||||| Sbjct 213910 CAAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 213865 Score = 120 bits (132), Expect = 3e-22 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 ||||||||||||| ||| | ||||||||||| |||||||| |||||||||||||| | Sbjct 214588 AGCCTGAGCACCAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCCAGGGTCCTG 214529 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 ||||||| ||||| ||||||||| ||||||| |||||||| || Sbjct 214528 CCGTCCTCAAGCTGCTTGCCCGCAAAAATAAGCCTCTGCTGATC 214485 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| ||||||||||||| |||| || |||||||| |||||||| ||||| |||| Sbjct 216461 CCCCTC--AGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCA 216404 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | ||||||| ||| || || || | || | ||||||||||| ||| | Sbjct 216403 GAGTGCGGCCATCCTCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAA 216344 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||| ||||| || ||||| || || | | ||| || || | || ||| | Sbjct 216343 TGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCT 216284 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | || ||||||||||| || | |||||||| || |||||||| Sbjct 216283 CAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||||| || |||| ||| | || |||||||| || ||||| ||||||||| Sbjct 215642 CCGCCCCGCAGCCGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 215583 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 ||||| | ||||||| ||||| || || ||| |||| || | ||||||||| Sbjct 215582 AGGGTGCGCCCGTCCTCGAGCTGCTTCCCAGCAAAAATCAGCCGCTGCTGGTC 215530 >seq1465 Length=98723 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || |||| || |||| |||| ||||||||||| || ||||| ||||| || Sbjct 61177 CCCCCCCGTAGCCGCAGAACCAGGTGCAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCG 61236 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| || ||||| || ||| | || || | ||||||||| ||| Sbjct 61237 AGTGTACGGCCATCCTCGAGTTGTTTCCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 61296 Query 21069 ACGCCTTCCTTGTC 21082 | ||| || ||||| Sbjct 61297 ATGCCCTCTTTGTC 61310 >seq871 Length=23497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || || || |||| || | ||| ||||| || || ||||| ||||| ||| Sbjct 11279 CCTCCTCGGAGTCTCAGAACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGCC 11338 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || | || ||||||||||||| |||||||| || || || | ||| || || ||| Sbjct 11339 AGCGAACGGCCGTCCTCCAGCTGCTTGCCCGC-TAGATGAGGCGCTGTTGTTCTGGGGGA 11397 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | || |||||||| |||||| Sbjct 11398 ATCCCCTCCTTGTCCTGGATCTT 11420 >seq1075 Length=42261 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || || | |||| ||| | ||| ||||| || || ||||| || || ||| Sbjct 14880 CCTCCTCGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 14821 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || ||||||||||||| || || || | || || | ||||||||| ||| Sbjct 14820 AGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 14761 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | || |||||||| |||||| Sbjct 14760 ATCCCCTCCTTGTCCTGGATCTT 14738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422249864640824