Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1776 113 4e-20 seq1541 107 2e-18 seq1075 107 2e-18 seq871 93.3 4e-14 seq1800 89.7 4e-13 >seq1776 Length=305386 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || ||||||||||| ||| || |||||| |||||| Sbjct 216447 CACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCCAGAGTGCGGCCATCCTC 216388 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| |||| | | |||||| || || || ||||||||||| || Sbjct 216387 CAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTG 216328 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| |||||| || ||||||||| | || | || || Sbjct 216327 AATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTT 216268 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| || || || ||||| Sbjct 216267 GCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || || |||||||| | || | |||||| Sbjct 214074 CACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTGCCATCCTC 214015 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| || | |||||| || || || || ||||| ||||| Sbjct 214014 CAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCCTCTTTGTCCTG 213955 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| |||||| | ||| ||||| | ||| | || || Sbjct 213954 AATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTT 213895 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||| || || ||||| ||||||||| Sbjct 213894 GCCGGTCAGGGTCTTCACAAAGATCTGCATG 213864 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | || ||||| ||| | || || || ||||| |||||||| || Sbjct 216238 TACCTCCGCGCAGACGCAGCACCAGGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCAG 216179 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||||||||||| || |||||| | || | ||||||||| || |||| Sbjct 216178 CCAGGGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCTGGAG 216119 Query 118630 GTATGCC 118636 | ||||| Sbjct 216118 GGATGCC 216112 >seq1541 Length=115782 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| || || || ||| |||||| Sbjct 43068 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTACGCCCATCCTC 43127 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || ||| | || || | |||||| || || || |||||||||||||| Sbjct 43128 CAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTG 43187 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| |||||| || ||| ||||| | || | || || Sbjct 43188 AATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACCTCAAGCGTGATGGTCTT 43247 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||| || || ||||| || || ||||||||| || Sbjct 43248 GCCAGTGAGGGTTTTGACGAAGATCTGCATGCCT 43281 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || |||||||||||||| | || ||| |||||| Sbjct 42840 CACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTC 42899 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || || || | || || | |||||| || || || || |||||||| || Sbjct 42900 CAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCCTG 42959 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | |||||| ||||||| ||||| | || | || || Sbjct 42960 AATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAACCTCTAGCGTAATGGTCTT 43019 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || ||||| |||||||| Sbjct 43020 CCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||| ||||| |||||||| || ||||||||||| || || ||||||| ||| Sbjct 43911 CAACACCAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAGTCCGCCAGAGTGCGCCCATC 43970 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCC 118636 ||| ||||| || ||||| | || | |||||||| || || || ||||| Sbjct 43971 CTCAAGCTGCTTGCCAGCAAAAATCAACCGCTGCTGGTCAGGGGGAATGCC 44021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | ||||| ||||| |||||||| ||||| |||||||| ||| | Sbjct 43279 CCTCCGCGCAGCCGTAGCACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCC 43338 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGC-TGATCGGGAGG 118630 | || || |||||||||||| || || || |||| ||||||||| || || ||||| Sbjct 43339 AGGGTACGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAGACGCTGCTTGGTCCGGAGG 43398 Query 118631 TATGCC 118636 || || Sbjct 43399 AATACC 43404 >seq1075 Length=42261 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||| || ||||| |||| ||||||||||| || ||||||||||| | Sbjct 14880 CCTCCTCGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 14821 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| ||||||| |||||||| || || || Sbjct 14820 AGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 14761 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || ||| || || | |||||| | ||| || Sbjct 14760 ATCCCCTCCTTGTCCTGGATCTTGGCTTTGACAGTGTCAATGGTGTCTGATGACTCCACT 14701 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | ||||| | |||| || || ||||| ||||| Sbjct 14700 TCGAGGGTTATGGTTTTTGCTGTCAATGTACGAACGAAAATTTGCAT 14654 >seq871 Length=23497 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | ||||| |||||||||| ||||||||||| || |||||||| || Sbjct 11278 ACCTCCTCGGAGTCTCAGAACCAAGTGGAGAGTAGACTCTTTCTGGATGTTGTAGTCAGC 11337 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || | || ||||| ||||| || || || |||||||| ||||| || || || || Sbjct 11338 CAGCGAACGGCCGTCCTCCAGCTGCTTGCCCGC-TAGATGAGGCGCTGTTGTTCTGGGGG 11396 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| || || ||| || | || | |||||| | ||| || Sbjct 11397 AATCCCCTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCTGACGACTCAAC 11456 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| | |||| || || | ||||||||| Sbjct 11457 TTCCAGGGTGATGGTTTTACATGTCAACGTACGAACGAGAATCTGCAT 11504 >seq1800 Length=440711 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || || | ||| |||| || | || ||| | |||||||||||| || | Sbjct 106646 CCTCCTCGCAAGCGCAAGACCAGATGCAGGGTGCTCTCGTCTTGAATGTTGTAGTCCGCC 106705 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| |||||| ||||| ||||| || ||||||| ||||| ||||| ||||| Sbjct 106706 AGGGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATGAGCCGCTGTTGATCCGGAGGA 106765 Query 118632 ATGCCCTCCTTGT-CTGTA 118649 ||||||||| | | ||||| Sbjct 106766 ATGCCCTCCATATCCTGTA 106784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433820808823288