Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Klebsormidium_20nitens_20[genbank_20GCA_5F000708835.1_202014-06-03] 1,814 sequences; 104,209,716 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1776 122 7e-23 seq1541 114 1e-20 seq1468 87.8 1e-12 seq1075 86.0 5e-12 seq1800 84.2 2e-11 >seq1776 Length=305386 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| || | ||||||||||| || |||||||||||||||||||||| | Sbjct 216464 CCACCCCTCAGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCC 216405 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || |||| || || |||||||| ||||||| ||| ||||| || || Sbjct 216404 AGAGTGCGGCCATCCTCCAACTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGA 216345 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| ||| ||| || ||| || | | | |||| | ||| ||| Sbjct 216344 ATGCCCTCCTTATCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACC 216285 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || |||||||| || || || || || ||||||||||| Sbjct 216284 TCAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATTTGCAT 216238 Score = 102 bits (112), Expect = 6e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||| || | |||||||| || ||| ||||||||| || ||||| || Sbjct 214091 CCTCCCCTCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCA 214032 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || ||||| || || || ||||| || | || ||| ||||| || || Sbjct 214031 AGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGA 213972 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| |||||| ||| || ||| || | | | |||| | ||||||| Sbjct 213971 ATTCCCTCTTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCGCTCGACTCCACC 213912 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 || | ||| || |||||||| ||||| |||||||||||||| |||||| || || Sbjct 213911 TCAAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATGATGGCT 213858 >seq1541 Length=115782 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | || || | |||||||| || ||| ||||||||| ||||| ||||| | Sbjct 44991 CCACCCCGCAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCC 45050 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || ||||| || || || ||||| || | || ||| ||||| ||||| Sbjct 45051 AGGGTTCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 45110 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| ||| || ||| || | | | |||| | ||||||| Sbjct 45111 ATTCCTTCCTTGTCCTGAATCTTGGCCTTTACGTTGTCGATGGTGTCGCTTGACTCCACC 45170 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||| || ||||| || ||||| |||||||||||||| |||||| || Sbjct 45171 TCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATGATG 45221 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||| || | |||| |||||| || |||||||||||||||||| || Sbjct 42823 CCTCCCCTCAGCCTGAGCACCAGGTGCAGGGTCGACTCCTTCTGAATGTTGTAATCAGCA 42882 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || |||| || || ||||| || |||| || ||| ||||| || || Sbjct 42883 AGGGTACGCCCATCCTCCAACTGCTTGCCGGCAAAAATCAGCCTCTGCTGGTCAGGCGGG 42942 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||| ||| ||| || ||| || | | | |||| | | ||| ||| Sbjct 42943 ATACCCTCCTTATCCTGAATCTTAGCCTTCACATTATCAATGGTGTCGCTGCTCTCAACC 43002 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 43003 TCTAGCGTAATGGTCTTCCCAGTCAGGGTCTTGACAAAGATCTGCAT 43049 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| || | ||||||||||| || ||||||||| ||||||||||| | Sbjct 43051 CCACCCCTCAGCCTGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 43110 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || | || |||| || || |||||||| || | || ||| ||||| || || Sbjct 43111 AGGGTACGCCCATCCTCCAACTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCTGGTGGG 43170 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| ||| || ||| || | | | |||| | ||| ||| Sbjct 43171 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCAACC 43230 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | || || |||||||| || || || || || ||||| |||||| Sbjct 43231 TCAAGCGTGATGGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATG 43278 >seq1468 Length=100361 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 || |||||||||||||| ||| || ||| || | | | |||| | | ||||| Sbjct 72293 GCTCACCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCGCTGCTCTCCA 72234 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 |||| | ||| || |||||||||||||| |||||||||||||| |||||| ||||| Sbjct 72233 CCTCGAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATGGTGCCT 72178 >seq1075 Length=42261 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||| | |||||||||||| || || || ||| ||||| |||||||| || | Sbjct 14880 CCTCCTCGGAGTCTTAATACCAAATGGAGAGTAGACTCTTTCTGGATGTTGTAATCAGCC 14821 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| ||||| || || |||||||| || | ||||| ||||| || || Sbjct 14820 AGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 14761 Query 45230 ACACCCTCCTTGTCC 45244 | |||||||||||| Sbjct 14760 ATCCCCTCCTTGTCC 14746 >seq1800 Length=440711 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| |||| ||| | || |||| ||||| |||||||| | |||||||||||||| Sbjct 106645 GCCTCCTCGCAAGCGCAAGACCAGATGCAGGGTGCTCTCGTCTTGAATGTTGTAGTCCGC 106704 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| ||| | || ||||| || ||||| || || || | ||||||||| || ||||| Sbjct 106705 CAGGGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATGAGCCGCTGTTGATCCGGAGG 106764 Query 45229 CACACCCTCCTTGTCC 45244 | |||||| | ||| Sbjct 106765 AATGCCCTCCATATCC 106780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395066465628094